Chryseobacterium suipulveris: MTP09_12215
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Entry
MTP09_12215 CDS
T08539
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
csup
Chryseobacterium suipulveris
Brite
KEGG Orthology (KO) [BR:
csup00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csup03009
]
MTP09_12215 (rlmD)
Enzymes [BR:
csup01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MTP09_12215 (rlmD)
Ribosome biogenesis [BR:
csup03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MTP09_12215 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_15
RrnaAD
N6_N4_Mtase
PCMT
PrmA
Methyltransf_2
Methyltransf_12
UPF0020
2-ph_phosp
Motif
Other DBs
NCBI-ProteinID:
UOE40655
LinkDB
All DBs
Position
complement(2609000..2610412)
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AA seq
470 aa
AA seq
DB search
MRKKHKNIVLENIKLISAGAKGVAVGRTEEGKTVLVSGAVPGDVVNARVKKSKSKYFEAD
AVEIIEKSPFRAEPKCIHFGVCGGCKWQNLSYEKQLEFKQDEVFNHIKRIGGIEDFETLP
ILGSKEQYFYRNKMEFSFSNARWLTLEEVNSGEDFDNKNALGFHIPVMWSKILDLKECYL
QEEPSNSIRLAVKNYAVEKGLEFFDVKNQEGFLRTLMMRQNSKGEWMVLFQLFKEDQENR
EALFDFLLERFPQIKTLVYVINSKPNDSIYDQDVITYFGDGFLMEEMDGLKFKIGPKSFF
QTNYNQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARNAKQVTGIESVQEAIDAA
KEHAELNGLSNCTFYCGDMKDIFNDEFLANHPKADVLITDPPRDGMHQKVVEQILKLSPE
KIVYVSCNSATQARDLALMKEQYQLVKILPVDMFPQTHHVENIALLVKKV
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagaagcataaaaatattgttttagaaaacatcaaactcatttccgcaggtgca
aaaggtgttgctgtcggaagaaccgaagaaggcaaaaccgtactggtttctggcgccgtt
ccgggcgatgtggtgaatgcacgagtgaaaaaatccaagtcaaaatattttgaggcagat
gcagtggaaattatcgagaagtcgccatttcgcgcagagccaaaatgtatccatttcgga
gtttgcggcggctgcaaatggcagaacctttcttatgaaaaacagcttgagtttaaacag
gacgaagtctttaaccatatcaaaagaatcggcggaattgaagatttcgagacgctgcca
attttgggaagcaaggaacagtacttctaccgcaacaaaatggaattttctttctccaac
gcgcgttggctgactttggaggaggtaaattccggagaggatttcgacaataaaaatgca
ctcggtttccatattcccgtaatgtggagcaagattctggatttaaaggaatgttatctc
caggaggaaccctcgaattccattcgacttgccgtaaaaaattatgcggtggaaaaaggt
ctggaattttttgatgtaaagaatcaggaaggtttcctgagaactttgatgatgcgccaa
aactcgaaaggagagtggatggtgcttttccaactgtttaaagaagatcaggaaaatcgc
gaagctctttttgatttcctattggaaagatttccgcaaatcaagactttggtttatgta
attaattcaaaaccaaacgattcgatctatgatcaggacgtgatcacttactttggcgat
ggttttctgatggaggaaatggatggattgaaattcaagatcgggccgaaatcctttttc
cagaccaattataatcaggcactcgaactttaccgaaaaactttagaattcgctgatttg
aaaggcgatgaggttgtttatgatttgtacactggaactggaacaattgcgcagtacgtt
gcaagaaacgcgaaacaggtgactgggattgagtcggttcaggaggcgatcgacgctgca
aaagagcacgcggaactgaacggactttctaactgcaccttttattgcggcgatatgaaa
gatatttttaatgacgagtttcttgccaatcatccgaaagcggatgtgctcatcaccgat
ccgccgagagacggaatgcaccagaaagtggtcgagcaaatcctgaagctttcccccgaa
aaaattgtgtatgtgagctgcaactctgcgacgcaggcgagagatttggcgttgatgaaa
gagcagtatcaactggtaaaaatcctcccggtcgatatgtttccgcaaactcatcatgtg
gagaatattgcgctgcttgtgaagaaggtgtag
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