Corynebacterium suranareeae: N24_1084
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Entry
N24_1084 CDS
T07007
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csur
Corynebacterium suranareeae
Pathway
csur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N24_1084 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csur03400
]
N24_1084 (mfd)
Enzymes [BR:
csur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N24_1084 (mfd)
DNA repair and recombination proteins [BR:
csur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N24_1084 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAU95346
UniProt:
A0A160PPE7
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All DBs
Position
1165563..1169216
Genome browser
AA seq
1217 aa
AA seq
DB search
MTPMLAGLLKVAATDPKLKGLMSNVGQQHLHITGIDQARPWVIGALAHHAPVLVVTATGR
EAEDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHLKDLKVVVAAARA
FCQPVLKEAEGRAPLTLSEGAEFDFSSLTSELVFRAYKHVDMVAKRGEFATRGGILDIFP
TTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIESIEIYPARELLITKDVAARAESLM
TKHPGNPTLVEMLSKISDSQDVDGMEALIPALTDTPMVPMLELMPENTHVLVIAPEKVRT
RIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEVSASKSDLAWWTF
APPGMFEAADEATLPLDFEAGPAPRGELPKIDEMMAQLLAHTTAGGRAAFIAPTQGAIKR
MVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDGAAMPLVVITETD
LTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISAGDETSR
REYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKKKARAAV
REIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKSVP
MDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMAGFPVTIK
GLSRFTSTADSKEILSGLATGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEH
IKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYEDKQVAAS
IRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDRE
YDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGE
AVEAYRALADGKTVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEIYRKLAQSESEVD
LRLAVEEMEDRYGPIPEEVARLLSVSRLRHLMREAHLTDIAVQGTRIKVHPVDLADSQQV
RLKRLFPGATYRAAAKAIQLSFPKAGNKVTDPLLRDVDLLQWIADFISKMFNLEEIDVRG
PKRGKPKKKTNVISVSE
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtgacaccgatgctcgcggggttgttgaaggtcgctgcaaccgaccctaaattaaaggga
ttgatgtccaatgtggggcagcagcatctgcatatcacgggtatcgatcaggctcgtccg
tgggtgatcggtgcgttggctcatcatgctccggtgttggtggtgactgctactggtcgt
gaggccgaggatcttaccgctgagttgaaggcaatgatgggggataaggtggcgtggctt
ccttcgtgggagacgttgcctcatgaacgcttaagccctggtgtagatattgtgggcaag
cgtgcccaggtactcaatcacttgaaagacttaaaagttgttgtcgctgctgcgcgcgcg
ttttgccagcctgtgctgaaagaagcagaaggtcgtgcgccgctgacactttctgaaggc
gcagagtttgatttttctagcctgacgtcagagttagttttccgtgcatataagcatgtg
gacatggtggcaaagcgtggtgagtttgctacccgcggtggcattttggatattttccct
accacgttggattatccggtgcgtgtggaattttggggcgatgaagtctctgacatcagg
cagttctctgttgccgatcagcgcaccatcccagaaattaccattgaaagcatcgagatt
tatccggcgcgtgaactgctgatcactaaagatgttgctgctcgtgctgagtcgttgatg
accaagcatccgggcaatcccacattggtggagatgctgtcaaagatttctgattctcag
gacgttgatggcatggaggcattgattccagcgctgaccgatactccgatggtgcccatg
ctggaactcatgccagaaaatactcacgtgttggtgattgctccggaaaaagtgcgcacc
cgtattgcggatttggaagcaaccgatgctgagtttttgatggcagggtgggaagccgct
gccatgggagctgatggtcccgtagctgcagaaggcctcgatttggaagcttctagctat
cgcagttatgaaagtttggaggtctctgcgtcgaaaagcgatttggcgtggtggactttc
gccccgcccggcatgtttgaggcggcggatgaagcgacgctgccgttggattttgaagcc
ggcccggcgccgcgcggtgagctgccgaaaatcgatgagatgatggcccagctgctcgcg
cacactaccgctggcggacgtgcggcgtttattgcgccaacccaaggcgcgattaaacgt
atggttgatcgctttgccgagaagggcattccgactcacgtggcaaccccaggctgggag
ccaacgcctggtcaagtcactttatatcatgcgctcagccatgccggtttggtatttcct
aaggtgcggaaacaccgtgatggcgctgccatgccactggtggttattaccgaaaccgat
ctgaccggtaaccgggtgggcgatatcgcgggagcaaaacgcaggcctgcgaaacgccgg
aacaaagtggatcctttggcattggaaccaggggatttggtggtgcatgaaacccacggc
attgggcgttttgtgaaaatgactgaacgtaccatttccgcaggtgatgaaacctcgcgc
cgggaatacatcgtgctggaatatgcgccatccaagcgtggccagccaggcgaccagctt
tacgtgcccatggatgcactggatatgctcagccgctacgttggtggcgaaaaaccaacc
ctttccaaaatgggtggttctgattggaaaaacgcgaagaaaaaggctcgagcagcagtc
cgggaaatcgccggtgagttggtggaactttacgccaagcgccaatccgcgccgggtcat
ccttttgcgccagatactccatggcaaaaagaaatggaagataactttccctacgtagaa
accgaagaccaaatgctggcgatcgatgcggtcaaggaggacatggagaaaagtgtcccg
atggatcgcgtgatcattggtgatgtgggatacggcaaaaccgaagtggcggtgcgcgcg
gcgtttaaagcagttcaagatggcaaacaagtagctgtgttggtgcccaccacgttgctt
gctcagcagcatcagtccacttttgaagagcgcatggctggttttccagtcacgatcaaa
ggcttgtcacgttttacttcgacagctgactctaaagaaattttgtccggacttgccacg
ggttcggtggatatcgtgatcggtacgcaccgtctattgcaaaccggtgtgcagtggaaa
aacttaggccttgtcattgttgatgaggagcagcgtttcggtgttgagcacaaagagcac
atcaaggctttgcgtactcacgtggatgtgttgaccatgtccgcaaccccaattccacga
accttggaaatgtctatggctggtattcgtgagatgaccaccatgctgacccctcctgag
gatcgccatcccatcctcacctatgtaggcccttatgaagacaaacaggttgcggcatca
attcgacgtgagctcctgcgagacggtcaagtctttttcatccacaacaaggtggcagat
attgaaaagaaagcccgtgaaatccgtgacctcgtgcccgaagcacgcgtggttgttgcc
cacggccagatgagcgaggaactgcttgagcaaacagttcaaggattctgggaccgcgaa
tacgacgtgcttgtgtgtaccaccatcgtggaaacagggttggacattgccaacgccaac
acgctgatcgtggaaaatgcccaccacatgggcttgtctcagcttcaccaattgcgtggc
cgagtgggtcgttcccgcgagcgcggttacgcttacttcctgtatccaaagggcgcaaca
ctaacggaaatgtcctacgaccgtcttgcgaccatcgcccaaaacaacgatctgggtgct
ggcatggccgttgcgatgaaggacctggaaatgcgtggcgccggaaacgtgctgggtgca
gaacaatcaggccacattgcaggcgttggctttgatttgtatgtgcgtcttgtcggtgaa
gcagttgaggcttatcgcgcgcttgccgacggaaaaactgtcgacggcaccgttaaagga
ccaaaggaaatccgcgtggaccttccagtggacgcccacattccggagaaatacatcaac
gccgaacgcctgcgcctggaaatttaccgaaagctcgcacaatccgaatccgaagtggat
ctgcgcctagcggtcgaagaaatggaagaccgctacggaccgatccccgaagaggttgcc
cgactgctctcggtatccaggttgcgccacctcatgcgcgaagcacacctcaccgacatt
gcagtccagggcacacgcatcaaggtccacccggttgacctggccgactcccagcaagtg
cgcttaaagcgcctgttcccaggcgccacctaccgcgctgccgctaaagcaatccagttg
tccttcccgaaggctggcaacaaggtgacagatcctttgcttcgcgacgtcgacctcctc
caatggatcgccgactttatttccaaaatgttcaacttggaagaaatcgatgtccgcgga
ccgaagcgaggcaagccgaagaagaaaacaaatgtaatctccgtcagcgaataa
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