Chromobacterium subtsugae: U6115_00420
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Entry
U6115_00420 CDS
T11179
Name
(GenBank) ribonuclease catalytic domain-containing protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
csut Chromobacterium subtsugae
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csut03016
]
U6115_00420
Enzymes [BR:
csut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
U6115_00420
Transfer RNA biogenesis [BR:
csut03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
U6115_00420
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Rx_N
Motif
Other DBs
NCBI-ProteinID:
WSE91734
LinkDB
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Position
96676..98550
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AA seq
624 aa
AA seq
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MNVFYEESGSFKVGSIVSRSDASLQVDTQHGKRAKLKSANVFLEFSSPLADFLPAVDALA
ADIDLDFLWECSQDDEFSYQDLAADYFGHAPSAVEAAALICRLHGAPMYFYKKGKGRYKK
APQDALQAALAGVERKKREQEQIDGWVRELKTGALPEAIRSQLMTLLWRPDKNTLEYKAF
DQASRETGLPPLRLADKVGGIPSVPDYLMAGFQMEYFPKGVGFGKYAPPAALPELPLASA
QAFSIDDANTTEIDDALSVEELPNGNKRVGIHIAAPTLGVPVDSDIEKMVLSRLSTAYFP
GDKITMLPDDVVQAFTLQEGRACPAFSLYAEVTPEFEPVAFENRIELVPIAANLRHAELE
QVFNEQTLANDPGVDYPFKRELVWLWQFAEALEKRRGKYDPTRPVQHDYNIDVVDGKVSI
TIRKRGAPMDKLVSELMILANSEWGRMLAEADIPAMYRAQSMGKVRMTTRPEPHMGLGVA
QYAWSTSPLRRASDFINQRQLSAMIRGEKPLFAQGDAMLFAILRDFDATYGAYLSFQDKM
EHYWCLKYLLQENITEPTASVIKEDLVRIDGLPLRLRIPGLPELARGDRVQLSVVKVDLL
TQEVELRYTGRLDHVEEAGEDEES
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttttttacgaagagagcggcagtttcaaggttggcagcatagtctcgcgcagc
gacgccagcctgcaggtggatacccagcacggcaagcgcgccaagctcaagagcgccaat
gtgtttctggagtttagctccccgctggcggattttctgcccgccgtggacgcgctggct
gcggacatcgacctggacttcctgtgggaatgcagccaggacgacgagttctcctaccag
gacctggccgccgactatttcggccacgcgccgtcggccgtcgaggccgccgcgctgatc
tgccggctgcacggcgcgccgatgtacttctacaaaaaaggcaaaggccgctacaagaag
gcgccgcaggacgcgctgcaagccgcgctggccggcgtcgagcgcaagaagcgcgaacag
gagcagatcgacggctgggtccgcgagctgaaaaccggcgccctgccggaagccatccgc
tcgcagctgatgactctgctgtggcgccccgacaagaacacgctggaatacaaggccttc
gaccaggccagccgcgaaaccggcctgccgccgctgcgcctggccgacaaggtaggcggc
attccctcggtgcctgattacctgatggccggcttccagatggagtacttccccaagggc
gtcggcttcggcaagtacgcgccgccggccgcgctgccggagctgccgctggcctcggcc
caggccttctccatcgacgacgccaacaccaccgaaatcgacgacgccttgtcggtcgag
gagctgcccaacggcaacaagcgcgtcggcatccacatcgccgcgccgacgctgggcgtg
ccggtggattccgacatcgaaaagatggtgctgtcgcgcctgtccaccgcctatttcccc
ggcgacaagatcaccatgctgccggacgacgtggtgcaggccttcaccttgcaggaaggc
cgcgcctgcccggcgttctcgctgtacgccgaggtgacgccggagttcgagccggtggcg
ttcgagaaccgcatcgagctggtgccgatcgccgccaacctgcgccacgccgaactggaa
caggtgttcaatgagcagacgctggccaacgatccgggcgtagactatccgttcaaacgc
gaactggtgtggctgtggcagttcgccgaagcgctggaaaagcgccgcggcaaatacgac
ccgacccgcccagtgcagcacgactacaacatcgacgtggtcgacggcaaagtgtccatc
accatccgcaagcgcggcgcgccgatggacaagctggtctccgaactgatgatcctggcc
aacagcgaatggggccgcatgctggccgaagccgacatcccggcgatgtaccgcgcgcaa
agcatgggcaaggtgcggatgaccacccgccccgagccgcacatgggcctgggcgtggcc
cagtacgcgtggagcacctcgccgctgcgccgcgccagcgacttcatcaaccagcgccag
ctctcggcgatgatacgcggcgaaaagcccttgttcgcccagggcgacgcgatgctgttc
gccattctgcgcgacttcgacgccacctacggcgcctacctgtcgttccaggacaagatg
gaacactactggtgcctgaagtatctgctgcaggaaaacatcaccgagccgaccgcttcc
gtgatcaaggaagacctggtgcgcatcgacggcctgccgctgcgcctgcgcatcccgggc
ctgccggaactggcccgcggcgaccgcgtgcagctgtcggtggtgaaggtggacctgctg
acccaggaagtggagctgcgctacaccggccgcctcgaccacgtcgaagaggccggcgag
gacgaagaaagctga
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