Chromobacterium subtsugae: U6115_01940
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Entry
U6115_01940 CDS
T11179
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
csut Chromobacterium subtsugae
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csut03000
]
U6115_01940
Transcription factors [BR:
csut03000
]
Prokaryotic type
Helix-turn-helix
Other families
U6115_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_30
AAA_2
AAA
HTH_23
PAS_4
Xre-like-HTH
HTH_28
HTH_29
HTH_7
Mg_chelatase
HTH_20
nSTAND3
IstB_IS21
HTH_22
MCM
Motif
Other DBs
NCBI-ProteinID:
WSE92032
LinkDB
All DBs
Position
complement(391715..393583)
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AA seq
622 aa
AA seq
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MNAVRSLPLGEIRRRFFTGQPLPGQALPPPILHSWQRCRSLGLPAGGGGGGGDKLSPMEL
NERQQANQDWLAPAAPALAGLYEQVASQQLALVVADSRGLILDECGHIDFLNKAERLALT
PGMDWSEAARGTNAIGTALAAMDSVLVRGGEHYLERNRVLACAAAPLLGPQGQLLGALDI
SGASRKLGPPQILALHAARGQIEARLLEDAARHGWLLCLHADPRLLDAPSACKLVFDGDG
RLLAANRPGLALCGLEAGGWQARHFAALFGQSLEHWLQRHGQAIGALRIGAQRFSARLKP
PAPAQSAASASRSPRSAPPAKAAPTAAIAPLDGAPPELFAAARKLLEADIPVLILGETGT
GKDRLARALHGAGSRRGQPFVAVNCAAIPEGLIEAELFGYLPGAYTGANRQGSKGRLREA
DGGVLFLDEIGDMPLALQARLLRVLQEREVTPLGGGPAQQLDIRLICATHRDLRAKVDEG
AFRADLYYRLCHYPLSLPPLRERGDVAAIAQRMLDEMGAARRGIALAPELARAFRGYRWP
GNLRELANLLATLLALADDGAQLEIRHLPALLRADMASQGHAVPDSAIADLLRRCGGNAS
AAARALGISRATLYRRLGKTAK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgtccgcagtttgccgctgggcgagatccgccgccgtttcttcaccggccag
cccttgcccggccaggcgctgccgccacccatcctgcactcctggcaacgctgccgcagc
ctgggcctgccggccggcggcggcggcggcggcggcgacaagctgagcccgatggagctg
aacgaaaggcagcaggcgaaccaggactggctggcgccggccgcgccggcgctggccggc
ttgtacgaacaagtggccagccagcagctggcgctggtggtggccgacagccgcggcctg
atcctggacgagtgcggacatatcgattttctgaacaaggccgagcggctggcgctgacg
ccgggcatggactggagcgaggccgcgcgcggcaccaacgccatcggcaccgcgctggcc
gcgatggacagcgtgctggtgcgcggcggcgagcattacctggagcgcaaccgggtgctg
gcctgcgccgccgcgcccttgctcggcccacagggacagttgctaggcgcgctggacatc
agcggcgccagccgcaagctggggccgccgcaaatcctggcgctgcacgccgcgcgcggc
cagatcgaggcgcgcttgctggaggacgccgcccgccacggctggctgctatgcctgcac
gccgatccgcgcctgctggacgcgccctccgcctgcaagctggttttcgacggcgatggc
cgcctgctggccgccaaccgcccgggtttggcgctgtgcggtctggaagccggcggctgg
caggcgcgccatttcgccgcgctgttcggccaaagcctggagcactggctgcaacgccat
ggccaggccatcggcgcgctgcgaatcggcgcgcaacgattctccgcccggctgaagccg
ccggctcccgcccaatcggccgcgtctgccagccgttcgcctcggtccgcgccgccggcg
aaagcagcgcccaccgccgccatcgcgccgctggacggcgcgccgcccgaattgttcgcc
gccgcgcgcaagctgctggaggccgacattccggtgctgatcctgggagaaaccggcacc
ggcaaggaccggttggcgcgcgcgctgcatggcgccggcagccgccgcggccaacccttc
gtcgcggtcaactgcgccgccattcccgaaggcctgatcgaggccgagctgttcggctat
ctgcccggcgcctataccggcgccaaccgccagggcagcaagggcaggttgcgcgaggcc
gacggcggcgtgctgttcctggacgaaatcggcgacatgccgctggccctgcaggcgcgg
ctgctgcgggtgctgcaggagcgcgaagtgacgccgctgggcggcgggccggcgcaacag
ctggacatccggctgatctgcgccacccaccgcgacctgcgcgccaaggtggacgagggc
gctttccgcgccgacctgtattaccggctctgccactatccgctcagcctgccgccgctg
cgcgagcgcggcgacgtggccgccatcgcgcagcgcatgctggacgaaatgggcgcggcg
cggcgcggcatcgcgctggcgccggagttggcgcgggctttccgcggctaccgctggccc
ggcaatctgcgcgaattggccaatttgctggccaccttgctggcgctggccgacgacggc
gcgcaactggaaatccgccatctgccggccttgctgcgcgccgatatggcaagccagggc
catgcggtgccggacagcgccatcgccgatttgctgcgccgctgcggcggcaacgccagc
gcggcggcgcgcgcgctgggcatcagccgcgccacgctgtaccgccgcttgggcaaaacc
gccaaataa
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