Chromobacterium subtsugae: U6115_07780
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Entry
U6115_07780 CDS
T11179
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
csut Chromobacterium subtsugae
Pathway
csut02020
Two-component system
csut02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
U6115_07780
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U6115_07780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csut03021
]
U6115_07780
Transcription machinery [BR:
csut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U6115_07780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_23
HTH_38
HMA_PCA1
Motif
Other DBs
NCBI-ProteinID:
WSE93134
LinkDB
All DBs
Position
complement(1575777..1577180)
Genome browser
AA seq
467 aa
AA seq
DB search
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQTEVERFLLDNPLLERGDEPRDAEAAP
EGQDSRETAADEAPDSHDDGAGGELLEWGAGSRQGGDDDYDPMLNVPCQVSLREHLLAQL
GEIALAGRDLAIVRLLIEELDDDGYLPLSLDELASHLPLELELESDELAVGLKLLQQFDP
AGVGARSLAESLQLQLQRLAADEAGRALALAIAREHLALLGGRDYAKLKKTLGCGDAELR
AAQALIARLNPHPATGFSHGDVHYVIPDISVRKRRGRWVAELNRSAMPRLRVNRLYERML
ADSRGQAGEMAGRLQEARWLVKNIQQRFDTILKVAEAIVDRQQSFFEHGEVAMRPLILRD
IADELGLHESTVSRSTSQKYLLCPRGLFELKYFFGSALETDSGGECSATAIKARIRGMID
SEDSGKPLSDSAIADALGKQGIQVARRTVAKYREAMQIPAVNLRKAL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaggcccttcagctcaaggtatcgcaacagctgacgctgacgccgcagctgcag
caatcgatcaaactgctgcagctgtccacgctggatctgcaaaccgaggtggaacgcttc
ctgctggacaatccgctgctggagcgcggcgacgagccgcgcgacgccgaagccgcgccc
gaaggccaggacagccgcgaaaccgccgccgacgaggcaccggacagccatgacgacggc
gccggcggcgaactgctggaatggggcgccggcagccgccagggcggcgacgacgactac
gaccccatgctcaacgtgccgtgccaggtcagcctgcgcgagcacctgctggcgcaactg
ggcgaaatcgcgctggccggccgcgatctggccatcgtccggctgctgatcgaagagctg
gacgacgacggctacctgccgctcagcctggacgaactggccagccacctgccgctggag
ctggagctggaaagcgacgagctggcggtgggcctcaagctgctgcagcaattcgatccc
gccggcgtcggcgcgcgctcgctggccgaatcgctgcagctgcaactgcagcggctggcc
gcggacgaagccggccgggcgctggcgctggccatcgcgcgcgagcacctggcgctgctg
ggcggccgcgactacgccaaactgaagaaaacactgggctgcggcgacgccgagctgcgc
gccgcccaggcgctgatcgcccgcctcaacccccaccccgccaccggcttcagccacggc
gacgtccattacgtgattccggacatcagcgtgcgcaagcggcgcggccgctgggtcgcc
gaactgaaccgctccgccatgcccaggctgcgggtcaaccgcctctacgagcgcatgctg
gccgacagccgcggccaggcgggcgaaatggccggccggctgcaggaggcgcgctggctg
gtgaagaacatccagcagcgatttgacaccatcctgaaagtggcggaagctatcgttgac
aggcaacaatcgttctttgaacacggcgaagtggcgatgcggccgctgatcctgcgcgac
atcgcggatgagctgggcctgcacgaatccacggtttcccgctccaccagccagaaatac
ctgctctgcccgcgcggcctgttcgagctcaagtatttcttcggcagcgcgctggaaacc
gatagtggaggcgagtgctccgccaccgccatcaaggctcgcatacgcggcatgatagac
agcgaggacagcggcaagccgctgtcggacagcgccatcgccgatgcgttaggcaagcag
ggaattcaggttgccagacgcaccgtagccaagtatcgtgaagccatgcagattccggcg
gtgaatctgcgcaaggctctgtag
DBGET
integrated database retrieval system
