Chromobacterium subtsugae: U6115_16735
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Entry
U6115_16735 CDS
T11179
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
csut Chromobacterium subtsugae
Pathway
csut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U6115_16735 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csut03019
]
U6115_16735 (pcnB)
Enzymes [BR:
csut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
U6115_16735 (pcnB)
Messenger RNA biogenesis [BR:
csut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U6115_16735 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
TPR_NUP120_160
Motif
Other DBs
NCBI-ProteinID:
WSE90529
LinkDB
All DBs
Position
complement(3498611..3499981)
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AA seq
456 aa
AA seq
DB search
MIRKLIRKVLDLPAGMSKRRNKPRVFPLPQHGVRRDQLSQAALRVTSRLQEAGYAAYVVG
GAVRDLMLGVSPKDFDVATNATPEQVHHLFRRSRIIGRRFRIVHVMMGPETIEVTTFRGG
NVDDTNETGRIMADNSFGSQEEDAHRRDFTVNALFYDPSDETVIDYHNGVKDLHAKKLVM
IGQPARRYQEDPVRMLRAVRLAAKLGFEIDEDTRKPIRAHAHLLKKEPAARLFDEMLKLL
MSGQAYACLKKLRDEGLARGVFPLLDAVMDDKGNNDDAFLRLSLESTDARLRADKPISVG
FLLATLLWRQVNQGWQQRLAAGEKSLPALLSAISDVESEQDNDFAIPRRFSVTMREIWTL
QARFDSRSGGRPYRFLEQPRFRAAYDFLALRSEAGEVPAQLVSWWERFQRADADECERLI
AEAKEQGGDAEPAKKRRRRRSNSRRRDESGGGESAE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcaagctaatccgaaaagtactggacctgccggccggcatgagcaaacgccgc
aacaagccccgcgtcttcccgttgccgcaacacggcgtgcgccgcgaccagctgagccag
gcggcgctgcgcgtcacctcccggctgcaggaggccggctatgccgcctacgtggtgggc
ggcgcggtgcgcgacctgatgctgggcgtgtcgcccaaggatttcgacgtggccaccaac
gccacgccggagcaggtgcaccatctgttccgccgctcccgcatcatcggccgccgcttc
cgcatcgtccacgtgatgatgggtccggaaaccatagaggtgaccaccttccgcggcggc
aatgtggacgacaccaatgaaaccggccgcatcatggccgacaacagtttcggcagccag
gaagaggacgcgcaccgccgcgacttcaccgtcaacgcgttgttctacgacccgtccgac
gaaaccgtcatcgactaccacaacggcgtcaaggacctgcacgccaagaaactggtgatg
ataggccagccggcgcgccgctatcaggaagacccggtgcgcatgctgcgcgcggtgcgc
ttggcggccaagctgggcttcgagatcgacgaggacaccaggaagccgattcgcgcccac
gcccatctgctgaagaaagagccggcggcgcgcctgttcgacgaaatgctgaagctgctg
atgtccggccaggcctacgcctgcctgaagaagctgcgcgacgagggcctggcccgcggc
gtgttcccgctgctggacgcggtgatggacgacaagggcaacaacgacgacgccttcctg
cgcctcagcctggaaagcaccgacgcccgcctgcgcgccgacaagccgatttcggtcggt
ttcttgctggccaccctgctgtggcgccaggtgaaccagggctggcagcagcgcctcgcc
gctggcgagaagagcctgccggcgctgttgtccgccatttccgacgtggagtccgaacag
gacaacgatttcgccatcccgcgccgtttcagcgtgaccatgcgcgaaatctggacgctg
caggcgcgcttcgacagccgcagcggcggccggccgtaccgcttcctggagcagccgcgc
ttccgcgccgcctacgatttcctggcgctgcgcagcgaagccggcgaagtgccggcgcaa
ctggtgagctggtgggagcgcttccagcgcgccgacgccgacgagtgcgagcgcctgatc
gccgaggccaaggagcagggcggcgacgccgagccggccaagaaacgccgccgccgccgc
agcaacagccgccgccgcgacgagtccggaggcggggagagcgccgagtga
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