Chromobacterium subtsugae: U6115_17570
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Entry
U6115_17570 CDS
T11179
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csut Chromobacterium subtsugae
Pathway
csut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U6115_17570 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csut03019
]
U6115_17570 (pnp)
03016 Transfer RNA biogenesis [BR:
csut03016
]
U6115_17570 (pnp)
Enzymes [BR:
csut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U6115_17570 (pnp)
Messenger RNA biogenesis [BR:
csut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U6115_17570 (pnp)
Transfer RNA biogenesis [BR:
csut03016
]
Prokaryotic type
tRNA degradation factors
U6115_17570 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
S1_RRP5
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
WSE90684
LinkDB
All DBs
Position
complement(3699393..3701537)
Genome browser
AA seq
714 aa
AA seq
DB search
MFNKITKSFQYGRHTVTLETGEVARQASGSVIVSVDDTVVLVTVVGGKSVKPGQDFFPLT
VDYLERTYAAGKIPGGFFKREGKQSEKEVLTSRLIDRPIRPLFPEGFYHDVQIVATVMSL
NPEVDSDIPAMIGASAALAISGLPFAGPIGAARVGYADGEYILNPTKTELQSSQMDLVVA
GTQRAVLMVESEAKELSEAVMLGAVVFGHEQMQAAIKAINELADEVNPVMFDWAAPVANE
ELIAQVRGIAGAKLADAFRLRQKQARTVVINEAWAEVKAALINETTDTLVANEIKGIFKG
LEAEIVRGQILAGEARIDGRDTRTVRPIRISNNVLPRTHGSALFTRGETQAMVVTTLGTK
QDEQIIDALAGEYTERFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALVAVLPPED
EFGYSMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNRFAVLT
DILGDEDHLGDMDFKVAGSASGITALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMKE
AVDGPQELSAHAPRLYVMKINPEKIREVIGKGGETIRSITKDTGCEINIEEDGTITIASI
SNEGAEAAKKRIEEITVEVEVGKVYEGTVVKILDNNVGAIVSILPGKDGLVHISQIANER
IKNVADYLKEGQVVKVKAIEMDDRGRIRLSIKALLEEEAKTAQATADSFGLKTQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaacaagatcaccaaatcgttccagtacggccgccacaccgtcaccctggagacc
ggcgaagtcgcccgccaggcatccggctccgtcatcgtatccgtagacgacaccgtagtg
ctggtgaccgtggttggcggcaagtccgtcaagccgggccaggacttcttcccgctgacc
gtagactacctggagcgcacctacgccgccggcaagatcccgggcggcttcttcaagcgc
gaaggcaaacagtcggaaaaagaagtgctgaccagccgcctgatcgaccgtccgatccgc
ccgctgttcccggaaggcttctaccatgacgtgcagatcgtcgccaccgtgatgtcgctg
aatccggaagtggattccgacattccggcgatgatcggcgcttccgccgcgctggccatt
tccggcctgccgttcgccggcccaatcggcgccgcccgcgtcggctacgccgatggcgaa
tacatcctgaacccgaccaagaccgaactgcaatcgtcgcagatggacctggttgtcgcc
ggcacccagcgcgccgtgctgatggtggaatccgaagccaaggaactgtccgaagccgtg
atgctgggcgccgtggtgttcggccacgagcagatgcaagccgcgatcaaggccatcaac
gaactggccgacgaagtgaacccggtgatgttcgactgggccgctccggtagccaacgaa
gagctgatcgcccaagtgcgcggcatcgccggcgccaagctggccgacgctttccgcctg
cgccagaagcaagcgcgcaccgtggtcatcaacgaagcctgggccgaagtcaaggctgcg
ctgatcaacgaaaccaccgacaccctagtggccaacgagatcaagggcatcttcaagggc
ctggaagctgaaatcgtccgcggccagatcctggcaggcgaagcgcgcatcgacggccgc
gacacccgcaccgtgcgcccgatccgcatcagcaacaacgtgctgccgcgcacccacggc
tccgcgctgttcacccgcggcgaaacccaggcgatggtcgtgaccacgctgggcaccaag
caggacgaacaaatcatcgacgcgctggccggcgaatacaccgagcgcttcatgctgcat
tacaacttcccgccgtactccaccggcgaagccggccgcatgggtccgccgaagcgccgt
gaaatcggccacggccgcctggccaagcgcgcgctggtagcggtgctgccgccggaagac
gaattcggctactcgatgcgcgtggtgtcggaaatcaccgaatccaacggctcctcgtcg
atggcttccgtgtgcggcggctgcctgtcgctgctgtccgccggcgtgccgctgaaggcg
cacgtggccggcatcgccatgggcctgatcctggaaggcaaccgcttcgcggtgctgacc
gacatcctgggcgacgaagaccacctgggcgacatggacttcaaggtagccggttccgct
tcgggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatcatg
caggttgcgctggaccaggccaaggaaggccgtctgcacatcctgggcctgatgaaggaa
gccgtggacggcccgcaagagctgtccgcccacgctccgcgcctgtacgtgatgaagatc
aacccggaaaagatccgcgaagtgatcggcaagggcggcgaaaccatccgctccatcacc
aaggacaccggctgcgagatcaacatcgaggaagacggcaccatcaccatcgcttcgatc
agcaacgagggcgcggaagcggccaagaagcgcatcgaagagatcaccgttgaagtggaa
gtgggcaaggtgtacgaaggcaccgtggtcaagatcctcgacaacaacgtcggcgccatc
gtttccatcctgccgggcaaggatggtctggtccacatttctcagatcgccaacgagcgc
atcaagaacgtggccgactacctgaaggaaggccaagtggtgaaggtcaaggccatcgaa
atggacgaccgcggccgcatccgcctgtccatcaaggccctgctggaagaagaagcgaaa
accgcccaggcgaccgctgattcgttcggtctgaagacccagtaa
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integrated database retrieval system
