Chromobacterium subtsugae: U6115_19670
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Entry
U6115_19670 CDS
T11179
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csut Chromobacterium subtsugae
Pathway
csut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U6115_19670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csut03019
]
U6115_19670
Enzymes [BR:
csut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U6115_19670
Messenger RNA biogenesis [BR:
csut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U6115_19670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
WSE91070
LinkDB
All DBs
Position
complement(4141159..4142514)
Genome browser
AA seq
451 aa
AA seq
DB search
MLFSELGLSPEILRAIEEQGYSQPTPIQGKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFANTSVSPAMHPVRALVISPTRELADQIGENVKSYTKYLPLRATTVYGGMNMDPQ
TQELRRGVEILIATPGRLLDHIQQKNVQLGKVEVLVLDEADRMLDMGFIQDIRKIMGLLP
KERQTLLFSATFAPEIKRLAADFMHSPQTVEVARQNATNDQVEQLVFKVDAFRKRQVLAQ
LIRARDMSQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLASFKDGELRV
LVATDVAARGLDISELPYVVNYEMPNSPEDYVHRIGRTGRAGAKGVAISLMSPDETRQHE
AIEKLTRQTLTPQSVDSFMPAQPPARAKPAAREREQGGAREPAAMREREVPALTGNGEGL
KQARPARRNRKARREVPALLLPPRYKVEIIR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccgaactcggcctgtcgccggaaatcctgcgcgccatcgaagagcagggc
tatagccagccgacgccgatccaggggaaggcaatcccgctggtgctgtccggccgcgac
ctgctggccgccgcgcagaccggcaccggcaagaccgcggccttcatgctgcctatcctg
gagcgcttgaagaaattcgccaataccagcgtgtcgccggcgatgcacccggtgcgcgcg
ctggtgatttcgccgacccgcgagctggccgaccagatcggcgagaacgtcaaaagctat
accaagtatctgccgctgcgcgcgaccaccgtctacggcggcatgaatatggatccgcaa
acccaggagctgcgccgcggcgtggaaattctgatcgcgacgccaggccgcctgctcgac
cacatccagcagaagaacgtgcagctgggcaaggtggaagtgctggtgctggatgaggcc
gaccgcatgctggacatgggcttcatccaggatatccgcaagatcatggggctgctgccc
aaggagcgccagacgctgctgttctcggcgacgttcgcgccggagatcaagcgtctggcc
gccgatttcatgcattcgccgcagacggtcgaggtggcgcgccagaacgccaccaacgac
caggtggagcagctggtgttcaaggtggacgccttccgcaagcgccaggtgctggcgcaa
ctgatccgcgcgcgcgacatgagccaggtgatcgtgttctgcaagaccaagatcagcgcc
gaccaactggcgcgcgacctgaagcgcgatggcctggatgccgaggccatccacggcgac
aagacgcagggcgctcgcctggagacgctggcgtcgttcaaggacggcgaactgcgcgtg
ctggtcgccaccgacgtggcggcgcgcggcctcgacatttccgagctgccctacgtggtc
aactacgaaatgccgaactccccggaagactacgtgcaccgcatcggccgcaccggccgg
gccggcgccaagggcgtggccatctcgctgatgagccccgatgaaacccgccagcacgag
gcgatcgaaaagctgacccgccagacgctgacgccgcaaagcgtggacagcttcatgccg
gcgcagccgcctgcgcgcgccaagccggccgcgcgtgaacgcgaacagggcggcgcccgc
gagcccgcagccatgcgcgagcgcgaagtgccggctctgactggcaatggcgaaggcctg
aagcaggcccgtcccgccaggcgcaaccgcaaggcccggcgcgaggttccggcattgttg
ttgccgccgcgctacaaggtggaaatcatccgctaa
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integrated database retrieval system
