Chromobacterium subtsugae: U6115_21635
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Entry
U6115_21635 CDS
T11179
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csut Chromobacterium subtsugae
Pathway
csut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U6115_21635 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csut03021
]
U6115_21635 (rpoC)
03400 DNA repair and recombination proteins [BR:
csut03400
]
U6115_21635 (rpoC)
Enzymes [BR:
csut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U6115_21635 (rpoC)
Transcription machinery [BR:
csut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U6115_21635 (rpoC)
DNA repair and recombination proteins [BR:
csut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U6115_21635 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Ead_Ea22
Motif
Other DBs
NCBI-ProteinID:
WSE91443
LinkDB
All DBs
Position
complement(4527413..4531609)
Genome browser
AA seq
1398 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGIASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPMQYRQLLTEEDFLDKEDQYGEEFVAMM
GAEAVKELLKKLDLDSEIETLRRELEATNSDTKIKKIAKRLKVLEAFQRSGMKPEWMILD
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVMGLASTIKAAKKLVEQEVPEVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLATNNVLSPANGEPIIVPSQDIVLGLYYMTRDKVNGKGEGMVFADTKEVHRAYETR
QVELATRITVRLKEWEKDEQGEFQPVIKRYDTTVGRAILSDILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIRDTVIFADQLMYTGFAYSTRGGISICVDDMQIPKKKTELLGEANKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRTGDKIAKAMMDELSKQRVLDRDGKEVDQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTTNGFTMKAVLQGGDVIEALRDRIL
GRVTAVDVVDPSTGETVIEAGTLLDEQMVDSIDSLGIDEVKVRTAITCDTRYGLCAKCYG
RDLARGKRVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVEGKSNGTVRF
SSQMRYVANTKGELIVITRSGEVVIHDDMGRERERHKVPYGATLMVTDGLQIKAGTVLAT
WDPHTRPIITEYAGRVKFENVEEGNTVAKQTDEVTGLSTLVVIDPKRRAGAQSKMLRPLV
KLLDDNGNEVKLAGSDASVSITFQVGAIITVRDGQDVGKGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLEGSGYENLIPKDKHVLVH
DGQVVNRGESIVDGPVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVVISDSGDTEFIQGEQVERAEVLEMNDKMVAEGKEPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHRTRRRQQLGLDAA
ESQLFDSGMLNTALENDE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgacctctttaagcaagttacgcaagaagaagagtttgatgcgatt
aagatcggcatcgcctcgcctgacaagatccgttcctggtcttatggtgaagtaaagaaa
cccgaaaccatcaactaccgcaccttcaagccggaacgcgacggcctgttctgcgcccgc
atcttcgggccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgaccctgtccaaagtgcgccgcgag
cgcatgggccacatcgaactggccagcccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcgttcgtggtgaccgatccgggcatgaccccgatgcagtaccgccagctgttg
accgaagaggacttcctggacaaggaagaccagtacggtgaagagttcgtcgccatgatg
ggcgccgaggcggtgaaggaactgctgaagaaactggatctggacagcgagatcgagacc
ctgcgtcgcgagctcgaagccaccaattccgacaccaagatcaagaagatcgccaagcgc
ctgaaagtgctggaggccttccagcgttccggcatgaagccggaatggatgatcctggac
gtgctgccggtgctgccgccggaattgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccggaacaaccgtctgaag
cgcctgctggaactgcgcgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggccgtttccgtcag
aacctgctgggtaagcgcgtcgactactccggccgttccgtgatcaccgtgggcccgacc
ctgcgcctgcatcagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
atcttccacaagctggaagtgatgggcctggcgtccaccatcaaggcggccaagaagctg
gtcgagcaggaagtgccggaagtctgggacatcctggaagacgtgatccgcgagcacccg
gtgctgctgaaccgcgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcc
cgcaccctgatgctggccaccaacaatgtgctgtccccggccaacggcgagcctatcatc
gtgccgtcgcaggatatcgtgttgggtctgtattacatgacccgcgacaaggtgaacggc
aagggcgaaggcatggtgttcgccgacaccaaggaagtgcatcgcgcttacgaaacccgc
caagtcgagctggctacccgcatcaccgtccgcctgaaggaatgggaaaaggacgagcag
ggcgagttccagccggtgatcaagcgttacgacaccaccgtcggccgcgcgatcctgtcg
gacatcctgcctaagggcctgccgttcgagcacatcaacaaggcgctgaagaagaaagaa
atctcgaaactgatcaacgtttcgttccgtcgttgcggcatccgcgacacggtgatcttc
gccgaccagctgatgtacaccggtttcgcctactccacccgcggcggcatctccatctgc
gtggacgacatgcagattccgaagaaaaagaccgaactgcttggcgaagccaacaaggaa
gtcaaggagatcgaagagcagtatcgccagggtctggtgacccagggcgaacgctacaac
aaggtggtggatatctggggccgcaccggcgacaagatcgccaaggcgatgatggacgag
ctgtccaagcagcgcgtgctggatcgcgacggcaaggaagtcgaccaagagtccttcaac
tcgatttacatgatggccgactcgggcgcgcggggttccgcggcccagatcaagcagctg
gccggcatgcggggcctgatggcgaagccggacggttccattatcgaaaccccgattacc
gccaacttccgcgaaggcctgacggtactgcagtacttcatctccacccacggcgcccgt
aagggtctggcggatacggcgttgaagaccgcgaactccggttacctgacgcgtcgtctg
gtcgacgtgacccaggatctggtggtgatcgaggacgattgcggcaccaccaacggcttc
accatgaaggccgtgctgcaaggcggcgacgtgatcgaagcgctgcgcgaccgcatcctc
ggccgcgtgaccgcggtagacgtggtggatccgtccaccggcgaaaccgtgatcgaagcc
ggcacgctgctggacgagcagatggtcgactcgatcgacagcctgggcatcgacgaagtg
aaggtgcgtaccgccatcacttgcgacacccgctacggtctgtgcgcgaagtgctacggc
cgcgacctggcgcgcggcaagcgcgtcaacgccggcgaagcggtaggcgtgatcgccgcc
cagtcgatcggcgaaccgggcacccagctgaccatgcgtaccttccacatcggtggcgcg
gcgtcgcgaaatgcggccgccagccaagtggaaggcaagtccaacggtaccgtgcgcttc
tccagccagatgcgttacgtggcgaacaccaagggcgagctgatcgtcatcacccgctcc
ggcgaagtggtgatccacgacgacatgggccgcgagcgcgagcgtcacaaggtgccgtac
ggcgcgactctgatggtgaccgacggtctgcagatcaaggcaggcacggttctggccacc
tgggacccgcacacccgtccgatcatcaccgagtacgctggccgcgtgaagttcgagaac
gtggaagagggcaacaccgtagccaagcagaccgacgaagtgaccggcctgtccacgctg
gtggtgatcgacccgaaacgccgcgccggcgcccagtcgaagatgctgcgtccgctggtg
aagctgctcgacgacaacggcaacgaagtgaagctggccggttcggacgcttcggtttcg
attaccttccaggtgggcgcgatcattaccgttcgcgacggccaggacgtgggcaagggc
gaagtgctggcccgcatcccgcaggaatcgtcgaagacccgcgacattaccggtggtctg
ccgcgtgtggccgagctgttcgaagcgcgttcgccgaaggatgccggcatgctggccgag
gtgaccggtaccgtttccttcggtaaggacaccaagggcaagcagcgcctgatcatcacc
gatctggaaggcagcggctacgaaaacctgatcccgaaggacaagcacgtgctggtccac
gacggccaggtggtgaaccgcggcgaatccatcgtcgatggtccggtcgatccgcacgac
atcctgcgtctgcagggcatcgaggcgctggcccgctacatcgtccaggaagttcaggaa
gtgtaccgtctgcagggcgtgaagattaacgacaagcacatcgaggtgatcattcgccag
atgctgcgtcgcgtcgtgatctccgacagcggcgacaccgagttcatccagggcgaacag
gtggaacgcgccgaagtgctggaaatgaacgacaagatggtcgcggagggcaaggagccg
gcgcagtacgaaaacgtgctgctgggcatcaccaaggcgtccttgtcgaccgactcgttc
atctccgcggcttccttccaggaaaccacccgcgtgctgaccgaagcggccatcatgggc
aagaaggacgatctgcgcggcctgaaggaaaacgtgatcgtcggccgtctgattccggcc
ggtaccggtctcgcgtaccatcgcacccgccgtcgccagcaactgggcctcgacgccgcc
gaatcgcagctgttcgactcgggcatgctcaacacggcgctggaaaacgacgaataa
DBGET
integrated database retrieval system
