Chromobacterium subtsugae: U6115_22075
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Entry
U6115_22075 CDS
T11179
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csut Chromobacterium subtsugae
Brite
KEGG Orthology (KO) [BR:
csut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csut03032
]
U6115_22075 (topA)
03400 DNA repair and recombination proteins [BR:
csut03400
]
U6115_22075 (topA)
Enzymes [BR:
csut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
U6115_22075 (topA)
DNA replication proteins [BR:
csut03032
]
Prokaryotic type
DNA Topoisomerases
U6115_22075 (topA)
DNA repair and recombination proteins [BR:
csut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U6115_22075 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WSE91521
LinkDB
All DBs
Position
4610096..4612405
Genome browser
AA seq
769 aa
AA seq
DB search
MPTSLLIVESPSKAKTLKKYLGPDFEVLASYGHVRDLVPKNGAVDPEKDFAMKYQLIARN
SKHVDAIVDAVAKVDHVYLATDPDREGEAISWHLVEILNKKKLLKDKAAQRVVFHEITKN
AVLEAIQNPREIAQDLVDAQQTRRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC
ERENEIKAFVQQEYWSVHLDSHKSRTKFSAKLTTLAGVKLDQFAIPNEAEQASVLARLAG
KPAQVGAIEKKKKTRSPAAPFTTSTLQQEAVRKLGMTTDRAMRTAQQLYEGMDIGQGTVG
LITYMRTDSVALANEAVEEIRGYIGLKWDADFLPKNPAVYKSKAKNAQEAHEAIRPTSIL
RTPEMVKPFLTTDQFKLYDMIWKRTLACQMAPAKFDTTSVDILVGEGVFRASGQVQTFAG
FLAVYEEDVDDAEDEDNAKLPLLAEGEELPVDKLYGDQHFTQPPPRFSEASLVKALEEFG
IGRPSTYASIISTLKDREYVILDKKRFLPTDTGDIVNKFLTEHFAQYVDYNFTAKLENQL
DEIASGNRQWVPVMDSFWKGFKKQIDEKESISRAEVTTESLDEACPKCSKPLSIKFGKRG
RFIACTGYPECDYTRNLGETAEQAAEEAEAPTVIEGRSCPDCGGELHIKKGRYGKFIGCA
NYPKCKHIEPLEKPRDTGVECPECKTGSLIERKSRYGKLFYSCNTYPKCKYATWNPPIAE
KCPQCGWPILTIKVTKRRGTEKVCPQKECGYAEQIAPPEGKEAAPAEEA
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccagcctcttgatcgtcgaatcgccgtcgaaggcgaaaacgctgaagaaatac
ctgggtccggacttcgaagtcctggcctcctacggccacgtgcgcgacctggtgccgaag
aacggcgccgtcgatcccgaaaaagacttcgcgatgaagtaccagctgatcgcgcgcaac
agcaagcacgtcgacgccatcgtggacgccgtcgccaaggtagaccacgtctatctggcg
actgacccggaccgcgaaggcgaagccatctcctggcacctggtcgaaatcctcaacaag
aaaaaactgttgaaggacaaggccgcccagcgcgtggtgttccacgaaatcaccaagaac
gcggtgctggaagccatccagaacccgcgcgagatcgcccaggacctggtggacgcccag
cagacccgccgcgcgctcgactatctggtgggcttcaatctgtcgccgctgctgtggaaa
aagatccgccgcggcctgtccgccggccgggtgcaaagtccggcgctgcggctgatctgc
gagcgcgagaacgagatcaaggccttcgtccagcaggaatactggtcggtccatctcgac
agccacaagagccgcaccaaattctccgccaagctgaccaccctcgccggcgtcaagctg
gaccagttcgccattcccaacgaggccgagcaggcttcggtgctggcgcgcctggccggc
aagccggcccaggtcggcgccatcgagaagaaaaagaaaacccgcagcccggccgcgccg
ttcaccacctcgacgctgcagcaggaggccgtgcgcaagctgggcatgaccaccgaccgc
gcgatgcgcaccgcgcagcagctgtacgagggcatggacatcggccagggcaccgtcggc
ctgatcacctatatgcgtaccgactcggtggcgctggccaatgaagcggtggaggaaatc
cgcggctacatcggcctgaaatgggacgccgacttcctgccgaagaaccccgccgtctac
aagagcaaggccaagaacgcccaggaggcgcacgaggcgatccgccccacctccatcctg
cgcacgccggagatggtgaagcccttcctcaccaccgaccagttcaagctgtacgacatg
atctggaagcggacgctggcctgccagatggcgccggccaagttcgacaccaccagcgtg
gacatcctggtgggggaaggcgtgttccgcgccagcggccaggtgcagacctttgccggc
ttcctcgccgtgtacgaggaggacgtcgacgacgccgaggacgaagacaacgccaagctg
ccgctgctggccgaaggcgaagagctgccggtggacaagctctacggcgaccagcacttc
acccagccgccgccgcgcttctccgaagccagcctggtgaaggcgctggaagagttcggc
atcggccgcccgtccacctacgccagcatcatctcgacgctgaaggaccgcgagtacgtg
atcctggacaagaagcgcttcctgccgaccgacaccggcgacatcgtcaacaagttcctg
accgagcacttcgcccagtacgtcgactacaacttcaccgccaagctggaaaaccagctg
gacgaaatcgccagcggcaaccgccagtgggtgccggtgatggacagcttctggaaaggc
ttcaagaagcagatcgacgagaaggaaagcatctcccgcgccgaagtcaccaccgaaagc
ctggacgaagcctgcccgaaatgcagcaagccgttgtcgatcaagttcggcaagcgcggc
cgcttcatcgcctgcaccggctacccggaatgcgattacacccgcaacctgggcgaaacg
gcggaacaggcggcggaagaggctgaggcgccgacggtgatcgaaggccgctcctgcccg
gactgcggcggcgagctgcacatcaagaagggccgttacggcaagttcatcggctgcgcc
aactacccgaagtgcaagcacatcgaaccgctggaaaagccgcgcgacaccggcgtggaa
tgcccggaatgcaagaccggcagcctgatcgaacgcaagagccgctacggcaagctgttc
tacagctgcaacacctatcccaagtgcaagtacgccacctggaacccgccgatagcggag
aagtgcccacaatgcggctggccgatcctgaccatcaaggtgaccaagcgccgcggtacc
gagaaggtgtgcccgcagaaggaatgcggctacgccgagcagatcgcgccgccggaaggc
aaggaagccgcgccggccgaagaggcctga
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