Cucumis sativus (cucumber): 101202778
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Entry
101202778 CDS
T02486
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X2
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csv03016
]
101202778
Enzymes [BR:
csv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
101202778
Transfer RNA biogenesis [BR:
csv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
101202778
Prokaryotic type
101202778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
101202778
NCBI-ProteinID:
XP_004145230
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All DBs
Position
1:22524363..22535537
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AA seq
507 aa
AA seq
DB search
MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP
DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG
NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG
IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH
NYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPS
LSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGC
DFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLR
GNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEK
LDKYTSIPNEELDEVRSAWKAWKYREH
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtctcttctttgcgactcccactttccccatggataaccaaagcttcatcttca
tgttttcgtttccccgaccctgttttcgtttcccggactcctcctcttaggcctgcactg
ctccactttttctcatcttctactgcctccaccgatgctttttccactcggtgcgctccg
gatcagctccggaaatggcaagctttccgtaagaaaaaggtcgttttgcgaatcggctat
gtcgggactgattatcgagggctacaaatgcaacgcaaccaactgtcacatccaacaatc
gaacaagaattggaagatgcaatatataaagctggtggaatttgtgatagcaactatgga
aatctgaacaaaatctcatgggcaaggagtagccgcactgataaaggagttcattctttg
gctacaacaataaccttaaaaatggaaatccctggaagtgcatggatagacgacccttgt
ggtatttcacttgctgattacatcaactcttatcttcctgataatatcaaggtttttggc
attgtacctgcacagaagaggtttgatcctagaaaggagtgtgatgttcggatgtattcg
tatctcctccctgctaagcttattggaattgaaagtaaacttaaaactactgaaattgat
tgccacatctcagactttaaagatatattaaaatcctttgagggggaccatccttttcat
aattatacagtacgctccatttatagaacgagaattcgagccaagcaactagtatatgcc
cttaagtcaggcaagaaggtatcacccggtgatatgtcaaactctgagtttgagggaagt
gatcaagaaaatgatacttttgttgaaggaatcaaggaaccagatcaacgttctccaagc
ttaagcgtctgtgaaaatctaactgaagtatgcagtaaacttgaagatggatcagaactt
ctgaagggtgttcgtgcaagatggcttcatgagccagatgagaaagatcgtataggcgcc
tcacacttcagaaggattctttactgttcttgtgggaagctggaaacatattttggatgt
gatttcattgagatatccatttggggagaatcattcatgttgcatcaaattcggaaaatg
atagcaacggctgtggcagtgaagcggaaacttctcccaagagatattataacattgtca
ctgaccaagttttctagaatagttttacccattgctccagctgaagtcttagtcctaaga
gggaacagtttttccaacagaaaacggccaggagctccaatgaggtcagagttgttcaca
ctgaatgaatcagatgacatagtcaattcagtgaatgaattctacagatcagcgatattg
cccgaggtaactaagttcctggacacagaaagccccccatggaaagaatgggtggagaaa
ttggacaagtacacaagcattccgaatgaagaattggatgaagttaggagtgcttggaaa
gcatggaagtacagggaacattga
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