Cucumis sativus (cucumber): 101202828
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Entry
101202828 CDS
T02486
Name
(RefSeq) uncharacterized protein LOC101202828 isoform X1
KO
K06100
symplekin
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101202828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101202828
03019 Messenger RNA biogenesis [BR:
csv03019
]
101202828
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101202828
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101202828
U7-dependent histone pre-mRNA processing factors
101202828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
101202828
NCBI-ProteinID:
XP_011652605
LinkDB
All DBs
Position
3:39420314..39445616
Genome browser
AA seq
1309 aa
AA seq
DB search
MAGVLRERALSLLAAANNHGDLTVKISSLNQVKDIILAIEPSFAAELYSYLVELQSSPES
SLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDGESIVAGQSIISGQKLFCGTLREMAL
QLHRRGKVERWLEELWMRMLKFKDEVLAIALEPGSVGKRLLALKFLETYVLLFTSDTNDP
QKAISEGNRDVFNISWLAGGFPILDPVGLMSEANRMLGILLNLLQTSSVPGTYTVTVVSS
LATIARKRPVHYGNILSALLDFVPSFEMIKGRHAASIQYSIRSALLGFLRCMHPAFVELG
FQSRDRLLKALRGINAGDAADQVIRQVDKMVKAADRAARDAWLGKDDQSSNQLNASADLT
RKRSRVLDDEELSNGREVSKQFRFGPDVHPISTAQKDGSLQNAISNGTSHDVSKLDVELT
PAEQMIAMIGALLAEGERGAESLGILISNIHPDLLADIVITNMKNLPKASPPLTWPGDLP
VTRQGSSHVQVLAPSAPLSSVQTSVTPAQVPSSLATSAGSTFAESTVNSLPIDSKRDPRR
DPRRLDPRRGGVSSASSMDEATSNTSDVDGSISLGKSASVPVSVTIENSSVSLISKTKVE
EKIIESPLVFGTDQSTPKSRSPDRAEKMDTILEIHAPLDPMPTAVGKVDDGLVAVSLLDD
LATKGDDTSSCVEYNQYSPSVTSAAASEDTCEELPLLPPYVDLTSEQQTTVRNLAAEKIF
DSCKNFNGADCHQIRLAIIARLVAQVDADDDIVRMLEKQVAIDYQQQKGHELALHVLYHL
HSLNILDSVESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGEVPVLPDSTLELLHKL
CSCDITDNRGKDTPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAI
RLVANKLYRLSYISDRIEQHATNMFLSAVDNVDQTDVEPSPCASIEQRTGVEGESLETSV
CGSQVSDPGTSENDSLRSSQPTVHGNSTLSLSEAERHISLLFALCVKNPCLLRFVFDAYG
RAPRAVKEAVHEHIPNLITALGSSDSELLRIISDPPPGSEQLLALVLQVLTQETAPSSDL
IATVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAYILQGSAHTR
PALTPVEVLIAIHNIIPERDGLPLKKITDACSACFEQRTVFTQQVLAKALSQMVEQTPLP
LLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQ
LPPTQLESALNKYVNLKGPLAAYASQPSTKSTLSRPTLIVLGLENERHL
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagttctcagagaaagagcactctctctcctcgccgccgctaacaaccacggc
gatttaacggtgaaaatttcatctttgaaccaggttaaggatatcatactggccatcgag
ccttctttcgcagcagagctttactcctacctggttgagcttcagtcctcccccgagagc
tcactacgtaaattgttaattgaggtgattgaagacattggattaagagccatggaacat
tctcctctgttaatgtcggttttgttggcatctctaaaggatggagaatcaatcgtagca
ggacaatcaattattagtggccaaaaattattttgtggtactttaagagagatggcatta
cagttgcatcggcgaggtaaagttgaaagatggctggaagaactgtggatgagaatgttg
aagtttaaagatgaggttttagcaattgctttagagcctggatctgttgggaagaggttg
ctggctctgaaatttttggaaacatatgttctactatttacatctgatacaaatgatcca
caaaaagctatctcagaaggaaatagggatgtttttaacatttcatggctagctggtgga
tttcctattttggatccagttgggctaatgtcggaagctaataggatgcttggtattctg
ttgaatttgttgcaaaccagttctgttcctggtacatacacagtaacagttgtcagtagt
ttagcaactatagcaaggaaaagaccagttcattatggcaacattctatcggcactgctg
gactttgttccgagttttgagatgataaaagggcgtcatgctgccagcattcagtattct
ataagatctgcccttttgggattcctaaggtgcatgcatccagcttttgtagagcttggt
tttcagtcaagagatagattgctaaaggctttaagaggtataaatgccggagatgctgcg
gatcaagtgatcaggcaagtggacaagatggtgaaagctgctgatcgagctgcacgtgat
gcttggctgggcaaggatgaccaatcatcaaatcagcttaatgcatcagcggatctgaca
agaaaaagatccagggttctggatgatgaagaactttccaatggccgtgaggtttccaag
caatttcggtttggtccagatgttcacccaatttccacagctcaaaaagatggttctctt
cagaatgccatctctaatggaacatcccatgatgtttctaaattagatgttgaattgact
cctgcagagcagatgattgcaatgattggcgccttacttgctgaaggggagcgaggtgca
gagtcacttggaattctgatttcaaatattcatcctgacttgttggctgatattgtcata
actaacatgaagaacttgcccaaagcatcacctcctttgacttggcctggagacttgcct
gtaactcgtcaaggaagtagtcatgtgcaagttctggcaccatcagccccattgagttcg
gtgcaaacttcagttactcctgcacaagttccttcttctttggctacctcagctggttca
acttttgctgagtctactgtcaatagtctccctattgattctaaacgtgatcccagaagg
gatccccgccgccttgatcctcgtcgtggaggagtatcttctgcttctagtatggacgag
gcaacttcaaatacatctgatgttgatggctccatatccttgggaaaatctgcttcggtt
cctgtttctgtgacaattgagaattcttcagtatctcttatatcaaaaacgaaagttgaa
gaaaaaattatcgagtctcccttagtgtttggaacagatcaatcaacccccaaatcaaga
tctcctgatagagctgagaaaatggacactatattagagattcatgcccctctggatccc
atgcctacagctgttggaaaagtggacgatggtttagttgcagttagtttgctcgatgac
ttagcaactaaaggggacgatacatcgtcttgtgtagaatacaatcagtattctccatca
gttacaagtgcagctgcatctgaagatacctgtgaggagctgcctttgcttcccccatat
gttgacttaacttcagaacagcaaacaactgtaagaaatttggcagctgaaaagatattt
gattcatgcaagaattttaatggggcagactgccatcagatacgcttggcaataattgct
cgattggttgctcaggttgatgctgatgatgatattgttcgaatgttggaaaagcaagtt
gctattgactaccaacaacaaaaggggcatgagcttgcgttgcatgtcttatatcatctg
cattcacttaatattctggattcagtggaaagttcttcttttgctgtgtacgagaagttt
cttctagttgtggctaaatcgttgctagatgcttttccagcttcggacaaatcttttagt
agacttcttggtgaagttccagttttgccggactctaccttggaactattacataaactt
tgctcttgtgatattactgacaaccgagggaaggatactcctgatattgagcgtgtcaca
caaggccttggcactgtttggaatttgattgtgaagcgtccatatagtcggcaagcttgc
ttagatattgctctgaagtgtgctatgcattcggaagttaaggttcgagcaacagctatt
agattggtggcaaacaaactctaccgcttaagttacatttcagataggattgagcaacat
gcaacaaacatgttcctgtctgcagtagacaacgtagatcagacagatgtagagccttca
ccatgtgcatcgattgaacaaagaactggagtagagggtgagagtttggaaacgtctgtt
tgtggttctcaagtttcagatccgggaacctcagaaaatgattcactgaggagttcacaa
cctacagttcatggcaattcaaccttgtcactttcagaagctgaaagacatatttctctt
ctttttgctctatgcgtgaagaatccttgtctgcttcggtttgtgttcgatgcttatgga
cgggctcccagagcagtgaaagaggctgtgcatgaacatatccctaatcttattacggcc
ctagggtcatctgattctgaattgctaagaataatatcagatccacctccaggaagtgaa
cagctcttagcattggtgctacaggtactaactcaagagacagcaccttcatctgatctg
attgcaacagtcaaacatttatacgaaactaagctgaaggatgtgacaattctcattcca
atgttgtcctcactttccaaaaatgaggttttacctgtttttcctcggctggttgatctt
ccgttggagaaatttcagagagcgttggcttacatattacagggttcagcacatacacgc
ccagctttaacacctgttgaagttctgattgccatccacaacataattcctgaaagggat
ggccttccactaaagaagataacagatgcttgttcggcttgttttgagcaacgtacagtt
ttcactcagcaggttttagcaaaagccttgagccagatggttgaacaaactccactccct
cttctcttcatgagaactgtgattcaggcaattgatgctttccctactctggttgatttt
gtcatggagatactttccaagcttgtaaacagacaggtctggaggatgccaaaattatgg
tttggttttttgaaatgtgcatttcaaacacagcctcattccttccgagtactattacag
ttaccaccgacacaacttgaaagtgctttgaataaatatgttaaccttaaaggtccgctt
gctgcttatgccagccagcccagcacaaaatctactctctctagaccgacactcatagtt
ctgggtcttgaaaacgaaaggcatttgtag
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