Cucumis sativus (cucumber): 101203071
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Entry
101203071 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101203071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101203071
03041 Spliceosome [BR:
csv03041
]
101203071
03009 Ribosome biogenesis [BR:
csv03009
]
101203071
03016 Transfer RNA biogenesis [BR:
csv03016
]
101203071
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101203071
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101203071
Spliceosome [BR:
csv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101203071
Complex C
U4/U6.U5 tri-SnRNP related factors
101203071
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
Pre-60S particles
Helicases
101203071
Transfer RNA biogenesis [BR:
csv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101203071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101203071
NCBI-ProteinID:
XP_004140482
UniProt:
A0A0A0KFR7
LinkDB
All DBs
Position
6:7468363..7478269
Genome browser
AA seq
994 aa
AA seq
DB search
MGPSKRKLLDDDSRQPSPKQHRTNVPAILEHEPVACLHDVSYPEGSFNPLPSSSLSSTGE
ELEPAKVFPFSLDPFQSEAIKCLETGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHHQPCHIVY
TDYRPTPLQHYIFPSGSEGLYLVVDEKGHFREDSFQKALNALVPVSDGDKKKENNGKWQK
SLTLGKTGEDSDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNGDDEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDE
KLEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRSEDGNPENLLRNSFYQFQADRNIPNL
EKQVKSLEEERDSIVIEEEDSLKNYYDLLNQYKSLKKDIRNIVLSPRYCLPFLQPGRLVS
IECNRNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYTVDVLTRCIVSKD
GIGKKNVRIIQLKEHGEPHVVSIPISQINTLASIRILIPNDLLPLEARENTLKKISEVLS
RFPKGVPLLDPEEDMKIQSSSYRKAVRRTEALESLFDKHEVAKSTLVEEKLKALHLKQEL
TAKIRSIKKQLRSSSVLAFKDELKARKRVLRRLGYTTSDDVVELKGKVACEISSANELTL
SELMFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLE
CKVEIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLI
LASKSIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggtccttccaagagaaaactgctcgacgatgattccagacaaccttccccgaagcaa
cacagaactaatgtccctgccattcttgaacacgaaccggttgcgtgtcttcacgatgtc
tcctaccctgagggttctttcaatcctctcccatcatctagtctatcttcgactggagag
gagttggaaccggctaaggttttccctttctctcttgacccttttcagtctgaggctatc
aagtgcttggaaactggagaatctgtcatggtgtctgcccatacatcagctggtaaaact
gttgtggcattgtacgcaattgccatgtctctccggaataaacagcgtgtcatatacacc
tcaccaataaaggccctcagcaaccaaaaatatagggaatttaaagaagaattctcagat
gttggtttaatgactggggatgtgacaattgatccaaatgcgtcttgtctggtcatgacg
acagagatttggcgaagcatgcagtacaaaggatcagaggttacacgggaagtggcatgg
attatttttgatgaagtacattacatgcgtgatcgggagcgtggtgttgtttgggaagag
agcattgtcatggctccaaagaatgctcgatttgttttcctctcagcaactgtaccaaat
gcaaaagaatttgctgattgggttgccaaggtccaccatcaaccatgtcatattgtttat
actgactatcggccaacgcctcttcaacactatattttcccatctggaagtgaaggctta
tacttggtggttgatgaaaaggggcattttcgcgaggatagctttcaaaaagctttaaat
gcacttgtccctgttagtgacggcgacaagaaaaaggaaaataatgggaagtggcagaag
agtttgactttgggcaaaaccggtgaagacagtgatatatttaagatggtgaagatgata
attcagcggcaatatgatcctgttatacttttcagctttagcaaaagagaatgtgaattt
cttgcaatgcagatggcaaaattggatctaaatggtgatgatgaaaaggtgaacatagaa
accatcttttggagtgctatggatatgctttcagatgatgataagaagctcccgcaggtt
tcaaatatgttgcctctcttgaagcgtggaataggggtccatcattctggcttgctccct
attttgaaggaggtgatcgagatattatttcaagaagggctaatcaagtgtttgtttgcc
acagagaccttcagcattggtttaaacatgcctgcaaaaactgtagtgttcagtaatgtt
cgtaagtttgatggggataagtttagatggttatcaagtggtgagtatatacaaatgagt
ggtcgagctggacggagaggaattgataaacgtgggatatgtatccttatggtggacgag
aaactggaaccttcaactgctaaaatgatgcttaaaggaaatgcggattgcttgaacagt
gcttttcacttgagctataacatgctcttgaatcaaatccgttctgaagacggcaatcct
gaaaatctgctgcgtaattccttctaccagttccaagccgaccgcaacatacctaacctt
gagaaacaagtgaaaagccttgaagaggagagggattccatagtgattgaagaggaagat
agtttgaagaattattatgatttactaaatcagtacaaaagtttaaagaaggatattcgt
aacattgtgttgtctcctagatactgcttgccatttctgcaacctggcaggcttgtatct
attgaatgcaaccgtaatgatgagatttcttctacattttccataaaggaccaggttacg
tggggattgataattaattttcaaagggtgaaaggtgtttccgaagaggatgctagcatg
aaaccagaatctgcaaactacactgtggacgttcttacaagatgcattgtcagtaaagat
ggcattgggaaaaaaaatgttaggattattcaattgaaagagcacggagaaccccatgtt
gtttccataccaatatctcagatcaatactttagctagtattcgtatacttataccaaat
gatcttttgccgttggaagctcgagagaatacattgaagaagatttctgaagttctatca
agatttccaaaaggagttccccttctagatccagaagaggatatgaaaatccaaagtagt
tcatacagaaaggctgtgcgtagaacagaggctttggagagcctctttgacaagcatgag
gtggcaaaatcgacacttgttgaggagaagctcaaagcattacatttgaagcaggagtta
acagctaaaatcagatcaattaagaaacaattgcgttcttcttctgtattggccttcaaa
gatgaactgaaggccaggaaacgagtattgcggaggcttggttacaccacaagtgatgat
gttgtggaactgaaaggcaaggttgcttgtgaaatcagtagtgcaaatgaattgactctt
tcagagctgatgttcaacggggttttcaaggacacaaaagtggaggaaattgtcgctctg
ctatcttgttttgtgtggcaagaaaaacttcaggatgcagcaaagcctagggaagagctt
gagctgcttttcattcaactacaagacacagctcgaagggttgctaaggtccagcttgaa
tgcaaggtcgaaattgatgtagaaggctttgtgagttcatttagaccggatattatggag
gctgtatatgcttgggcaaaaggatccaaattctatgagataatggaaataacacaggtt
tttgaggggagcttgattagagcgataagaagacttgaagaagttttgcaacaacttata
ttagcttcaaagtccattggtgaaactgaacttgaaaccaagtttgaagaggctgtttcc
aaaatcaagagggatattgtttttgctgcttctttgtacttgtag
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