KEGG   Cucumis sativus (cucumber): 101203156
Entry
101203156         CDS       T02486                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03013  Nucleocytoplasmic transport
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101203156
  09122 Translation
   03013 Nucleocytoplasmic transport
    101203156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101203156
   03041 Spliceosome [BR:csv03041]
    101203156
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     101203156
Spliceosome [BR:csv03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101203156
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR41 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_IFT122_1st Ge1_WD40
Other DBs
NCBI-GeneID: 101203156
NCBI-ProteinID: XP_004144008
UniProt: A0A0A0LWJ2
LinkDB
Position
1:complement(25854195..25862559)
AA seq 369 aa
MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS
CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR
DCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC
AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN
QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH
LCTFCCQYR
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgttgggggacgcaacgaattgggacgaagctgcctacagagagagtatatataaagaa
agagagattcaaactcgtactgtgttcagaactgcatgggcgccttctttaaatggctgc
cctgagaccattgtggctgcatccagtgatggatccgttgcctcttactctatcgcttct
tgcatctctaagctccaatttggttatggaaatactaaaagtttgttagcagcagagcct
aattgcttccttcaagggcacgatgggcccacgtatgatgtcaaattttacgataatggt
gacaatactctattactgagctgtggggatgatggtcacattcgaggatggaggtggaga
gattgtacagatataaaagtgcccatttctttgcaaggtagtcatattgagcctgtaatg
gacctgatcaatcctcaattcaaaggtccttggggtgctctttctccaatccctgaaaat
aatgcaattgctactgatgcccagagtggatccattttctctgctgctggagattcttgt
gcgtattgttgggatttggagagcggtaaagttaagatggtgtttaaggggcactctgac
tacttgcactgtattgttgcgcgaaacactgtcaatcaaatcataactggttcagaagat
ggtacagcacgaatatgggattgcaagagtggaaagtgcattcaactaattgaccctgct
aaggataagaagttgaaagggcatttctcatttgttagatgcattgctcttgatgcaagt
gaaagctggttggcctgtgctgatggtcggagtatatctgtttggaaccttccgtcttct
gaattcatttcaaaaactttgacccgttcttcattgcaggatatggttttttgtgataat
caaatattaggtgttggagcagagccatttctaactcgattcgacataaatggatccgtg
ctttcacaaatacaatgcgcccctcagtcagctttttctgtcgcattgcatccatctggc
gtcgcagcagttggagggtacggtggtctcgtcgatgttatctcgcagtttggaagtcac
ttatgcacattctgctgtcaatacagataa

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