Cucumis sativus (cucumber): 101203811
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Entry
101203811 CDS
T02486
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03022
Basal transcription factors
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101203811
09124 Replication and repair
03420 Nucleotide excision repair
101203811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101203811
03400 DNA repair and recombination proteins [BR:
csv03400
]
101203811
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101203811
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101203811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Motif
Other DBs
NCBI-GeneID:
101203811
NCBI-ProteinID:
XP_011653743
LinkDB
All DBs
Position
4:complement(16737075..16767695)
Genome browser
AA seq
595 aa
AA seq
DB search
MGTKYVHKSAKYKTSVKDPGTPGVLEMTECKFVFRPSDPTSASKLDVEFRFIKGHKNTKE
GSNKPPWLNLTKDQGGSYIFEFKNFSDLHVCRELVGSALAKLGEAAQAPSERPVAAFPHE
QLSKLEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLEQDNSKKSKQLIGF
KSSMVLDTKPMSDGRTNKVTFNLTPEIKYQIFALKPAVHQAFLNHVPNKISEKDFWTKYF
RAEYLHSTKNSIAAAAEAAEDEELALFLKDDEILAAETRKKIRHVDPTLDLEADLGDDYT
HLPDHGIFRDGGKEITESQNEHYRRTLSQDLNRQGAVVLEGRTIDVDLEDPRTVADALVR
SKHAVEGNESQTALDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDT
RAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQL
GKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIY
RQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccaagtatgtccataagagtgctaagtacaagacctcagttaaggatcctggc
acacccggcgttttggaaatgacagagtgcaagtttgtatttagacccagcgatcccact
tcagcttctaagcttgacgtggagtttagatttattaaaggccataaaaacactaaggaa
ggatcaaataaaccaccgtggcttaatctcaccaaggaccagggtggaagttacattttt
gagtttaaaaatttctcagatcttcatgtttgtcgcgagcttgtaggaagtgctttagca
aagttgggagaggctgcacaagctccctctgagagacctgtggcagcatttcctcatgaa
cagctcagtaaattagaaatggaacttcgaatgagatgtttgcaagaagatagtgaacta
cagaaactccataaacaatttgtgattggtggtgtgttgaccgaatctgaattctgggca
gcaaggaagaaattactggaacaagacaactccaaaaagtcaaaacagctgattggtttt
aagagttcaatggttttggataccaaaccaatgtctgatggtcggacaaacaaggttaca
tttaatttgacaccggagatcaaatatcagatttttgctctgaaaccagctgttcaccaa
gcatttcttaatcatgttcccaataagatatcggagaaagacttttggacaaaatatttt
agagcggagtaccttcatagtacaaaaaattctattgcagctgcagcagaggctgctgaa
gatgaagaacttgccctttttctgaaggacgatgagatattggctgctgaaactcggaaa
aagattcggcatgttgatcctacattggatttggaagctgatctaggggatgattacaca
caccttccagatcatggaatctttcgtgatggtggcaaggaaataactgaatcacaaaat
gagcactatagaaggactttgtcacaagaccttaatcgtcaaggtgcagttgttcttgaa
ggcagaactattgatgtagacttggaagatccaaggaccgttgcagatgcacttgtgcgg
tctaaacatgcggtagaaggaaatgagagccagacagcacttgataggatctctaggatg
acagcaattgaggatcttcaagctcctcatagccatccttttgctcctctttgtatcaag
gatcctcgagattattttgatgctcaacaagcaaatgccattaagacattggatgataca
cgagctggaatgcaacaaactaaatgcagtttaagcactacagaagcatatggctcactg
agggaatccatatctgagatcaagtcatctggattcaatcatcccataattaaaccggaa
gttgcacttatggtttataatggattaactcaaaatatttctagtaccaaatatcaactt
gggaaaaaccctcaggagagtattctggagagtttgccaaaccctactaaggaggaactg
ctacaccattggatctcgattcaagaattactcaagcatttttggtcgtcttatccaatc
accacatcatatctttataccaaagtgagcagattgaaggatgcaatggccaaaatctat
cgacagttagaggagatcaaggaaaccgtggtggcagatttccgccaccaagtatctctt
ttggttcgtccaatgcaccaggctctggatgctgcgtttcagcatcatgacgctgacatg
cagaagagatcagtaaagagtggagaaaggcttaacggatacacttag
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