KEGG   Cucumis sativus (cucumber): 101203991
Entry
101203991         CDS       T02486                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03018  RNA degradation
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101203991
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101203991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101203991
   03041 Spliceosome [BR:csv03041]
    101203991
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101203991
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101203991
Spliceosome [BR:csv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101203991
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 101203991
NCBI-ProteinID: XP_011653886
UniProt: A0A0A0K9I4
LinkDB
Position
4:complement(20929304..20934229)
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
GAKASTGGRGKGGPGGKPGANRVGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcctctttccctcctaaagactgctcaaggacacccaatgttggtggaattgaaa
aatggtgagacttacaatggccatttggttaattgtgacacatggatgaacattcatctt
cgggaagtcatctgcacttctaaagacggtgatcggttttggcgaatgcccgaatgttat
atccgtggtaatacaatcaagtatttgcgagttccagatgaggttattgacaaagttcag
gaagaaaccaaaagccgtgcagataggaaacctctgggtgtagggcgtggacgaggaaga
gggcgtgaggatggtcctggtggcagaccagctaaaggaatggggcgaggctttgatgat
ggtgcaaaagcttctactggcggccgtggaaagggtggccctggtgggaaacctggtgcc
aacagagttggaggcaggggacgaggttga

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