KEGG   Cucumis sativus (cucumber): 101204364
Entry
101204364         CDS       T02486                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
csv  Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:csv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:csv03009]
    101204364
Ribosome biogenesis [BR:csv03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    101204364
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EML EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_LRRK2 Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_Vps41 Nucleoporin_N WDR54 Beta-prop_DCAF12 Beta-prop_IFT122_1st PROPPIN Beta-prop_WDR19_1st Beta-prop_WDR75_2nd VPS8_N DUF465
Other DBs
NCBI-GeneID: 101204364
NCBI-ProteinID: XP_011654116
UniProt: A0A0A0KZT0
LinkDB
Position
4:complement(24398668..24402387)
AA seq 509 aa
MGLVHVGSFGNSPHPIQLLPAAVSFGAKFRCGCRAVFHPSHRHKNIQTKLKTETLLSSSQ
LTMVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATA
GSVLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHA
HYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD
IVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDG
KIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRT
NNVIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYT
GVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHW
RKMYDNLHQFCVNELLDGNQTKNIEGNST
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgggcctagtccatgttggttcgttcggcaattcccctcaccctattcaactccttccc
gccgccgtctccttcggggctaaatttcgttgtggttgccgcgctgtttttcatccatcg
caccgccataaaaatattcaaaccaaattgaaaactgaaaccctcctctcaagctctcaa
ctcacaatggtgctactcgttgcttcctcgtctattgattcagggattggttgctgggac
ctccataccggctcagaacaactgcgttacaagtcttgtgcttctccaccacatggtctt
gtttgtgtaggtagaaagtttctcgcatgctctcagcttcgcgatcctgcagccactgct
ggctccgttctctactggtcttggtctaagcctcaagttgaagttaagagttttccggct
gaaccaataatggccttggcttccaaccatgagggtacttatattgttggtggtggtttc
tctggagatatatacttgtgggaggttttgagtggtagactgcttaaaaaatggcatgct
cattatagagcagttacttgccttgtattctctgaagatgactccctgttagtttctggt
tctgaagatggctgcattagagtttggtctcttataacggtttttgatgatggttggcaa
agggaagcaaaacatttgtatgagcatagtttcactgggcataatctgcctgttactgac
attgttgttggctatggaggattcaatgctattataatctcttcctctgtggatcgtact
tgtaaggtgtggagcttatcgaaggggaagttgttaagaaatatcatatttccttcaatc
attgatgccattgctttggatcctggtgaacatgtcttttatggtggtggtagagatggg
aagatctacactgctgcgcttaatgctaaatgcccatccagcagtgactacggattgcat
atactcgggtcaatatcaaatcaaagcaagtcagttacttccttggcatactgctcaagt
ggtaatttgttgatctctggatctgaggatggagcaatacgagtttgggatacaagaacc
aataacgttattcgtgttttcagacattccaaaggtcctgtaaataatatacttcttgtt
caacaacagcccctccctaaatcacagtcaacttcccaaggttctttgagaaagcaccga
ccactcttacctcctgcccttgcgaaatttgaaaactctaaggacgaggatgaatacact
ggtgttatcattgatccatcaggtcctcccaaggaatctacggggttttctttccttagt
tctcacgttatggatgatcaaatcacagaacttcagcaacagggttctgctgccaccgga
atggagttggaaagacttaagcatgattatggaaaatccaagcaaatgttacaacactgg
agaaaaatgtacgacaatttacatcaattttgtgttaatgagcttctggatggcaatcaa
actaaaaatatagaaggcaattccacttga

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