Cucumis sativus (cucumber): 101204563
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Entry
101204563 CDS
T02486
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101204563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101204563
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101204563
Spliceosome [BR:
csv03041
]
Complex C
Other components
Step II factors
101204563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
nSTAND3
AAA_30
AAA_24
T2SSE
ATPase
AAA_16
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
101204563
NCBI-ProteinID:
XP_004148974
UniProt:
A0A0A0K5G4
LinkDB
All DBs
Position
7:complement(16897778..16909955)
Genome browser
AA seq
1298 aa
AA seq
DB search
MKTPGGDDAIDIDRTTLLLEPENNTEGGLSVPGKDKPVFRPPERRSHLGLDVLANAKRGG
SNDNGFKIPQQSIASFVSSMEEEDTIESSGVTDSGKEAIPRSHSVKNRNYREIASNDSNE
GNTLAEDRITGSSFKSRNSNETSDSSVTTMSSKSTHASRYRSPRQDYDNHDRERKEFDND
SRSNNRRARHGHGDGDEPYYGRSRYQRDFGRENERKRSRYESSRRTPGRSDWDDGRWEWE
ETPRRDGRSEETPRRDGRSNSSRHYQPSPSPMYVGASPDARLVSPWFGGNTPNSTGSSAS
PWDQISPSPVPVRASGSSVRSSSTSYLSKTHHLKFSSRSSPLAEDSQQDSQADKSELNGS
KHEISENMRLEMEYNSDRAWYDRDEGNTMFDADSSSFFFGDDAAFQKKEAELAKRLVRRD
GTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVILLVHDTKPP
FLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSSLVREIHEKQNMNKSRQRFWELAGSKL
GDILGVEKTAEQIDADTAAVGDEGEVDFKEDAKFAQHMKKGEAVSEFAKSKTLAQQRQYL
PIYSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLFEDGYTTNGIVGCTQPRRVAAMS
VAKRVSEEMECDLGDKVGYAIRFEDVTGPSTIIKYMTDGVLLRETLKDSDLEKYRVIVMD
EAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVN
TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALAERIEQLISSTK
KGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGK
MKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQ
RTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMV
EFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFIPESD
HLTLYNVYQQWKQHQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTD
LVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTK
EYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKEEKTAMEQEMESLRKIQVESE
KENKEREKEKRRKQQQQISMPGFRQGSGTYLRPKKLGL
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgaagactccaggaggagatgacgccattgacatagatagaacaaccctattgttagaa
ccagagaataatactgaagggggattgtcagttccgggaaaggataaaccggtgtttaga
cctcctgaaagaagatcccatctaggtcttgatgtccttgcaaatgcaaaaaggggagga
tctaatgataatggattcaaaatcccacaacaaagtattgcttcttttgtttcatcaatg
gaagaagaggatacaattgaatcatctggagtaaccgattcaggaaaagaagctattcca
cgaagtcattctgttaaaaatagaaattatcgggaaatagcttccaatgattcaaatgaa
gggaatactttagctgaagatagaataactggaagttcatttaagagtcgaaattctaat
gaaacttcggattctagtgttacaactatgtcatccaaaagcacacatgcgagcaggtat
aggagccctagacaagactatgataatcatgacagagagagaaaagaatttgacaatgat
agtagaagcaataacaggcgggcgagacatgggcacggtgatggtgatgagccttattat
gggagatctcggtaccaaagggactttggcagggaaaatgaaagaaagagaagtagatat
gaaagttcacgaagaactcctggtagatctgattgggatgatggtagatgggaatgggaa
gaaacaccacgtagagatggccgctcggaagaaacaccacgtagagatggtcgctctaac
tctagtaggcactatcaaccttcaccatctccaatgtatgttggcgcctcaccagatgct
cggttagtttctccatggttcggcgggaacactcctaattctactggttcttctgcttcc
ccttgggatcagatctctccttctccagttccagtgcgtgcctctggatcttcagtaagg
tcatcaagcacaagttatctttctaaaactcaccatcttaaattttcatcgcgaagttca
cctttggccgaggattctcaacaagattctcaggcagacaagtccgagttaaatggatcc
aagcacgagatcagtgagaacatgcgtttggagatggagtacaactctgaccgggcttgg
tatgatagagatgaaggtaatacgatgttcgatgctgatagctcatcatttttctttgga
gatgatgctgccttccagaagaaagaagcggagctggccaaaagattggtccgtcgagat
ggaacaaagatgactcttgctcaaagcaaaaagctgtctcagctcactgcagataatgca
cagtgggaagaccgacaacttttaagatcaggagctgttaggggtactgaggtgcaaact
gaatttgacgatgaggaagagcggaaagtcattcttcttgtacatgatacaaagcctccg
ttccttgatggaagagttgttttcactaaacaagcagaaccaataatgccaataaaagac
cctacatcagatatggctataatatcgcgtaaaggatcttcattggtgagggaaattcat
gagaaacaaaatatgaacaagtcacgacaacgtttttgggaacttgcgggctctaaactt
ggtgatatccttggtgttgagaaaacagctgagcagatagatgcagatactgcagcagta
ggtgatgaaggtgaagttgattttaaggaagatgcgaagtttgcacaacatatgaagaag
ggggaagcagtgagtgaatttgctaagtcaaaaacccttgcacaacaaagacaatatctt
cctatatattctgtcagagatgagctgctgcaggttatccgtgaaaatcaggtggttgtg
gtggttggagaaactggttcaggaaagaccacacaactaactcagtatctctttgaggat
ggttatactacaaatggtattgttggttgcacccaaccaaggcgtgtggcagcaatgagt
gtagcaaaaagagtcagtgaagagatggagtgcgacttgggtgataaagtaggctatgcc
attcgatttgaggatgtaacagggccatcaactattatcaagtatatgactgatggagtt
cttctacgtgaaactctcaaagattctgatcttgaaaaataccgtgtaattgtaatggat
gaagctcacgagaggtcacttagcaccgatgtcctttttgggatcttgaaaaaggtggtt
gcccaacgtcgtgatttcaagcttattgtgacatctgcgactcttaatgctcaaaagttt
tcaaacttttttggaagtgtcccaatttttcacatccctgggagaacatttcctgtgaat
actttgtatagcaaaactccatgtgaagattacgttgaagcagctgtaaagcaagctatg
accatccatatcactagccctcctggtgacattcttatcttcatgactggccaagatgag
atagaggcagcctgttttgcccttgcagagcgcattgaacaactcatttcatcaacaaag
aagggggtgcccaaacttttgatactacccatctattcgcagctgccagctgacttgcaa
gccaaaatatttcagaaagctgaagatggcgctcgtaaatgcattgttgcaaccaatatt
gccgagacttccttgacagttgatggaatattttatgttatagacacgggttatggtaaa
atgaaagtgtacaaccctagaatgggtatggatgcactacaagtatttccagtaagtcgt
gctgctgctgatcaacgtgctggacgtgccggtagaactggacctggtacttgctatcgt
ttgtacacagagagtgcatacttaaacgaaatgcttccaagtcctgtgccagaaatccaa
agaactaacctggggaatgttgttttactacttaaatctcttaaagttgaaaacctactg
gattttgacttcatggatccgccaccacaggataacattctcaactccatgtaccaattg
tgggtattaggggctcttaacaatgtaggaggcttgactgaccttgggtggaagatggtt
gagttcccattggatcccccactagccaaaatgcttctgatgggcgagcaacttgggtgc
cttgatgaggtactaacgatcgtttcaatgctttcagtaccatcagtattttttagacct
aaagaccgagttgaggagagtgatgctgcaagggagaggtttttcattccagaatcagac
catttaacgctatataatgtttaccaacaatggaaacaacaccagtacaggggagattgg
tgcaatgaccatttcttgcacgttaaagggctacgaaaggctcgagaggtgcggtcgcag
ttgttagacattttgaagactttgaaaatacctctgacatcttgttggccagatacagat
ctcgtgagaaaggctatttgctctgcctattttcacaatgcagctagattgaagggtgtg
ggagaatacgttaactgcagaaatgggatgccatgccatcttcatccgagcagtgctctt
tatggcatgggatgtactcctgattatgttgtgtatcatgaattgattttgacgacgaag
gagtatatgcaatgtgcgaccgcagttgagcctcagtggttggctgaacttggtccaatg
ttcttctctgtcaaggaatcagatacatcactcttggagcataagaaaaggcaaaaggaa
gagaaaacagccatggaacaagagatggagtcgttaagaaagattcaagtcgagtcagag
aaagaaaacaaagagcgggaaaaggagaagagaagaaagcagcagcagcaaatttctatg
ccgggttttcgtcaaggttcaggaacttatctaagaccaaagaagctaggtttgtga
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integrated database retrieval system
