KEGG   Cucumis sativus (cucumber): 101205036
Entry
101205036         CDS       T02486                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101205036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101205036
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     101205036
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd WD40_Gbeta WDR55 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_HPS5 eIF2A Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_WDR41 Beta-prop_VPS8 Cytochrom_D1 Ge1_WD40 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st CFAP43_N WD40_like Tricorn_2nd Beta-prop_pof12 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 101205036
NCBI-ProteinID: XP_004144016
UniProt: A0A0A0LWK2
LinkDB
Position
1:25928735..25931441
AA seq 321 aa
MKLAGLKSVENAHEESVWAATWVPATDTRPSLLLTGSLDETVKLWKSDELDLERTNTGHC
LGVVSVAAHPSGFIAASASLDSFVRVFEVDSNSTIATLEAPPSEVWQMRFNPEGTMLAVA
GGGSASIKLWDTNTWKLAATLSIPRPEGPKPTDKTASKKFVLSVAWSIDGRRLACGSMDG
TISVFDVARAKFLHHLEGHFMPVRSLVYSPVEPRLLFSASDDAHVHMYDAEGKTLIGAMS
GHSSWVLSVDASPDGAAVATGSSDRTVRLWDLNMRTAVQTMTNHSDQVWGVAFRPPGGVG
VRSGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactcgccggtctcaaatccgttgaaaacgctcacgaagagtccgtatgggcggcc
acttgggttccggccaccgacactcgtccttctctcctcctcaccggctccctcgacgag
actgtcaagctatggaagtccgatgagctcgacttggaacgcaccaacactggccactgc
ctcggcgtcgtctctgttgctgctcatccttctggtttcattgctgcctctgcttccctc
gatagttttgttcgtgtctttgaagtcgattccaactccactatcgccactcttgaggct
cctccttctgaagtctggcaaatgcgcttcaatcccgagggtaccatgttagcagttgcc
ggtggaggtagcgcatcaattaagctttgggacacaaacacatggaaactggctgcaact
ctatcaattcctcgtccggaaggccctaagcccaccgataaaactgctagcaagaagttt
gtactttcagtagcatggagcattgacgggagaagactcgcttgtggttcaatggacggg
accatttcagtctttgatgtagctcgtgcgaagtttctacaccacttggaaggccacttc
atgccagtgagatccctcgtgtattcaccagtggagccacgcctactcttttctgcctct
gatgatgctcatgtccacatgtatgacgcagagggtaaaactctaattggagcgatgtca
ggccattcaagttgggtattgagcgttgatgcaagccctgatggtgctgctgttgctacc
ggttcaagtgacagaaccgttaggctttgggatctcaacatgaggactgctgttcagaca
atgactaaccatagtgatcaggtctggggagttgcatttcgaccacctggtggggttggc
gtgcgatctggtcgacttgctagtgtgtctgatgacaagagtatctccttgtatgactat
tcttga

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