Cucumis sativus (cucumber): 101205132
Help
Entry
101205132 CDS
T02486
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03022
Basal transcription factors
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101205132
09124 Replication and repair
03420 Nucleotide excision repair
101205132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101205132
03036 Chromosome and associated proteins [BR:
csv03036
]
101205132
03400 DNA repair and recombination proteins [BR:
csv03400
]
101205132
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101205132
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101205132
Chromosome and associated proteins [BR:
csv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
101205132
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101205132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
AAA_11
NAMPT_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101205132
NCBI-ProteinID:
XP_011659313
UniProt:
A0A0A0K5Q0
LinkDB
All DBs
Position
7:17764534..17773323
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN
VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS
IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV
SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaattagaggatgtcacagtctacttcccttacgatcacatttaccctgag
cagtacgcttacatgctcgagctgaagcgagctctcgacgccaagggccattgtcttctc
gaaatgcccaccggcaccggaaaaaccatcgcccttctttcccttatcaccagctacgcc
ctctccaaaccccaaaaccctgtcaagctcatctactgcactcgcactgtccacgaaatg
gagaagaccctcgctgagctcagattgcttcatgattaccaggttcagcagcttggacct
cgcgctcagatcttggctgtggggctttcgtccaggaagaatctgtgtgtcaatccgaat
gttttggcgtcggaaagtcgggattctgttgacgctggttgtcgcaagttgacggcgagt
tgggttagggctatggcggctgagaatcccgatgttcccacttgtgagttcttcgagcaa
tatgaaaaggcgggttccagtgctgtgttgccgccgggggtttatacgttgcaggatctg
agagcttttgggacaaagaagggttggtgtccttacttcttggcacggcatatggtacag
tttgcaaatgtggtagtatatagttatcaatacttgcttgatcccaaagtggctagcatt
atatccaaggaaatgcagcgagaatctgtagtagtgtttgatgaggcgcacaatattgat
aacgtgtgtattgaagctcttagtgttagtgtgaggaggcagactattgaaggtgccaga
agaaatctcaataaaatgcgccaggagattgagaggttcaaggaaactgatgcaggtaga
ctgcgagcagaatataacaggctggtggagggtttggcacaaagaggaaacctacctatt
tcggacacgtggctctcaaaccctgctcttccagatgatattttgaaggaggctgtgcct
ggaaatatacgccgagccgaacactttatacatgtattgcggagattggttcagtatctt
gaaggacgattggatactgaaaatgttgagaaggaagggcttgtaacttttgttggctct
attggttcacaggctggaattgaccaaaaaactttgaagttttgttacgatcgtctccac
tccctcatgctgacacttgaaattactgacacagatgaatttttgcacgtacagactata
tgtgattttgcaacactcgttggaacatatgcacgaggtttctcaattataattgagcct
gttgatgagagaatgccgcatattcctgaccctgtactgcagcttagctgtcatgatgcc
tcacttgcaattaagcctgtgtttgaacgattccaatcagttgtgattacgtctggtact
ctgagcccaattgatctataccctcgtttactcaattttaatcctgtggttagcagaagt
tttacaatgtccttgaccagagactgtatatgcccaatggttctcactcgtggcagcgac
cagcttccagtgagtactaaatttgatatgagaagcgatcttggtgtagtaaggaattat
ggcaggctcttgcttgagatggtctcagcagtcccagatgggatagtatgtttctttgtc
agttactcatatatggatggcattattaatagttggaatgaaactggcatcctaaaggaa
ataatgcagcacaaacttgtattcattgagacccaagatgtcgttgagactacgctggct
cttgacaattaccgcaaagcttgtgattgcgggagaggtgctgtttttttttccgtagcc
aggggaaaagttgctgaaggtatagattttgatcgacattacggacgattggtgataatg
ttcggtgttccttttcaatacacattaagcaaaattttgcttgctcggctggagtattta
cgtgagacatttcaaataaaggaaggggattttttaacttttgatgctttgagacaagct
gcacaatgtgttggtcgagttatccgatcaaaggctgattacggaatgatgatatttgct
gacaaaaggtatagtcgtcatgataaacgctcaaaattgcctggatggatattgtcacat
ttacgtgatgcacacttgaatttgagcacagacatggctctgcacatagctcgggagttc
ctaaggaagatggcacaaccctatgataaggcagggagcagtggtagaaagaccttattg
tcccaagaagacttagaaaagatgtctgaagccaacatgaatgagatgttgtattaa
DBGET
integrated database retrieval system
