Cucumis sativus (cucumber): 101205163
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Entry
101205163 CDS
T02486
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03020
RNA polymerase
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101205163
09124 Replication and repair
03420 Nucleotide excision repair
101205163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101205163
03400 DNA repair and recombination proteins [BR:
csv03400
]
101205163
Enzymes [BR:
csv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101205163
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101205163
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101205163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
101205163
NCBI-ProteinID:
XP_004134705
LinkDB
All DBs
Position
6:complement(29229890..29238577)
Genome browser
AA seq
1199 aa
AA seq
DB search
MEDYEEYDRNMNDDDDMDQAIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
TMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPK
AARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAE
SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHI
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEML
PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPE
DGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILG
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARY
SRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV
DNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIA
NLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggaggattacgaagagtatgatcggaatatgaatgacgacgatgatatggaccaggct
atccctgacgacgaagaagagatcacacaggaagatgcttgggcagtaatttcagcatat
tttgaagagaaagggttggtccggcagcagctggattccttcgatgagtttattcagaat
actatgcaggaaatcgtggacgagtctgcagacattgagattcgccccgagtcacagcac
aatcccggccaccagtcggatgttgctgagacaatatacaagatcagctttggtcagata
tacttgagtaagccaatgatgaccgaatctgatggagagactgcaaccttatttcctaag
gctgcacggttgaggaatttaacatactcagcgcctttgtacgtggatgtctcaaaaaga
gtcattaagaaaggtcatgatggtgaagaagttactgaaacccaagattttacaaaagtt
tttattgggaaggttcctatcatgctccgatcgagttattgcacactgtatcaaaattct
gagaaggatctcactgagctcggggagtgtccatatgaccaaggaggatattttatcatc
aatggcagtgagaaggttcttattgcacaagagaagatgagcacaaatcatgtatatgtt
ttcaagaaaagacagcctaacaagtatgcctttgtagcagaagttcggtctatggctgag
tcacaaaatagaccacccagtaccatgtttgtacggatgctttctcgaactagtgccaag
gggggttcttcaggacagtacatacgtgccactctgccttacattagaaatgagattcca
attataattgtgtttcgtgctctaggatttgttgctgacaaagatattctagagcatata
tgttatgacttctctgatactcaaatgatggagttgcttcggccttccctggaagaggct
tttgttatccaaaatcaacaggttgcactagactatattgggaagagaggatcaacagtt
ggtgtgaccaaggaaaagaggattaagtatgccaaggagatccttcaaaaagaaatgctt
cctcatgttggcgtaggtgaattttgtgagacgaagaaggcatattattttggttatata
attcaccggctactcttatgtgcccttggccggagagcagaagatgacagggatcactat
ggaaacaaacgactggaccttgctggtcctttacttggaggcttgttcagaatgctattt
agaaagttaacaagagacgtgagaggttatgtacaaaagtgtgttgataatggaaaggac
gtcaatttgcaatttgccatcaaggcgaaaaccattactagtggcctgaaatattcactt
gccactggaaactgggggcaagcaaatgcagctggtacaagagctggagtatcacaggtg
ttaaatcgtttgacatatgcatcaactttgtctcacttacggaggctgaattcccccatt
ggacgagaaggtaaattggccaagcctcgacagttgcataattcacaatggggaatgatg
tgtcctgctgaaacgccagaaggacaagcatgtggactggtaaaaaatcttgcattgatg
gtctatattacggttggatctgcagcataccctattttggaatttttggaagaatggggc
acagagaatttcgaggaaatttctcctgctgtcattcctcaagctacaaaaatttttgtc
aatggttgttgggttgggatccatcgagatcctgaaatgttggtgaagactttgagacgg
ctgaggagacgagttgatgtaaatactgaagttggagttgttagagatatccgtttgaaa
gaactacggatatatactgattatggccgttgcagccgtccattattcattgttgagaaa
caaaggcttctcataaagaagaaggatatccatgctcttcagcagagggaatctccagaa
gatggtggttggcacgatcttgtagcaaaaggattcattgaatacatagacactgaagaa
gaggaaactaccatgatttccatgacaattagtgatcttatacaagcaaggatcaacccg
gttgaggcttattctgacacttacactcactgtgaaatccatccatcattgattttgggt
gtttgtgcttcaattattccatttcccgaccataaccagtctccacgtaacacgtatcaa
tctgccatgggtaaacaagctatgggaatttatgtcaccaactaccaatttcgaatggat
actttggcctatgttttgtattatccgcaaaaacctcttgtgactactcgagctatggag
caccttcatttcaggcaacttccagctggcattaatgccattgttgccattgcttgctac
tctggttataaccaggaagactctgtgatcatgaatcaatcttccattgaccgtggattt
tttaggtcacttttcttccggtcatacagagatgaggagaaaaaaatgggaactcttgta
aaagaagattttggacggccggacaggagtaatactatgggtatgaggcatggctcttat
gataaattggatgacgatggtcttgcaccccctggtaccagagtatcaggtgaggacgtc
attattggaaagactactcctatctctcaggaagaagcccagggacaagctgcacgttac
tcaagacgtgatcatagcattagtttacgtcacagtgaaaatgggattgtagatcaagtt
ctactgaccacaaatgctgatggattgagattcgtgaaagtaagggtgagatctgttcga
atacctcagattggggataagttcagcagtcgacatggtcaaaaaggaacagtgggaatg
acttacacacaagaagacatgccttggactgtggaaggaatcacccctgatattatcgtg
aatccacatgctattccttctcggatgacaattggtcagcttattgagtgtatcatgggg
aaggtggcagcccacatgggaaaagaaggagatgctaccccatttactgatgtcactgtg
gataacatcagtaaggcactgcataagtgtggttatcagatgcgtggatttgaaaccatg
tataatggccatacaggccgacggctctcagcaatgatattcctcggtccaacatactat
caaaggctgaagcatatggttgatgacaaaatacattcacgtggaaggggtcctgtgcag
atccttacgagacaacctgctgagggtcggtcacgtgatggtggtctccgatttggggag
atggagcgtgactgcatgattgcccatggtgccgctcattttctaaaggagaggttgttc
gatcaaagtgatgcttataggatccatgtctgtgagtgttgtggattgatagccattgca
aatctcaagaagagttctttcgaatgtaggggctgcaaaaacaaaactgacatcgttcag
gtatatatcccttatgcctgtaagcttctcttccaagagcttatggccatggcaatagca
ccacgtatgttcacaaaggagatcaaaccattaaaagaccaaaagaagaaaggatcctga
DBGET
integrated database retrieval system
