Cucumis sativus (cucumber): 101205451
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Entry
101205451 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101205451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101205451
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101205451
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101205451
mRNA degradation factors
3'-5' decay
Ski complex
101205451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
DUF1922
Motif
Other DBs
NCBI-GeneID:
101205451
NCBI-ProteinID:
XP_011658457
UniProt:
A0A0A0LV33
LinkDB
All DBs
Position
1:21978896..22004092
Genome browser
AA seq
1349 aa
AA seq
DB search
MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY
IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG
AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID
RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP
IENLQSELSVQFDDLFKKAWEEDAIESVEDGQSPKAESIKSEDRVRELEAISIAPAPGIS
ALDEILSLESGGFSLSSDQATEVGAQKKEAWVVVGGREDISLRFHDLVPDMALDFPFELD
TFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRD
FCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIER
GVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKRIHVTGTAKRPVPLEHCIFY
SGELYKICESEIFLSHGLKAAKDASKKKNSSVVGGAGGSHAGASVANDGTKNRKVESFNR
SKQNKHSGSQNLGNFSGTSWGNQKNGDGHNNWGSRRSDASLWLLLINRLSKKSLLPVVIF
CFSKNRCDKSADNIYSIDLTSSSEKSEIRVFCDKAFSRLKGSDRSLPQIVRVQGLLRRGI
GVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQL
LPGEYTQMAGRAGRRGLDKIGTVIVMCREEIPEEKDLKRVIVGTATKLESQFRLTYIMIL
HLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTRTIECIKGEATIEEYYDL
YAEAEKPSNQLSEAVMQSSAIQQFLVPGRVVIVKSQSAKDHLLGVIVKANMNRQYIVLVL
MPDSLPTQSSSSSDLEKKKQDLTQGYFMVPKSKRGLENDYYSPSTRKGSGLVNIRLPHAG
AAVGISYEVRGVDAKDFLCVCTKKIKLDSGRLLEEVSNVAYSQTVQQLLDIKSDGKYPPA
LDPLKDLKLKDVNLVEAYKNLTDISLKMIANKCHGCIKLGEHLKLAAEIKKHKEEVNNLK
FQMSDEALQQMPDFQGRIDVLKEIGCINSDLVVQMKGRVACEMNSGEELICTECLFENQL
DNLEPEEAVALMSAFVFQQKNTSEPSLTPKLSMAKKRLYETAIRLGQLQAQFRLQIDPEE
YARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAAAIMGN
SALHKKMETASNAIKRDIVFAASLYITGL
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggacccaattgaagcaacaaaggagctgtcatttcgtgtcggtttttccggtcacagc
ggtcatctcagggtcgagcctctttcaactgtcgagcgctccaccccgattcgatcactc
ccggatttcatacttccacctgcatttcctaaggaaacacctgaaacgataaagaattac
atagaagagacttatctccaaccaaggttagaccctgatgaattctcccctgaaaaagtg
ggaagacagtgggattttgattggtttgaaatggcaaaagtatccttggatccatctccg
ccaagatctgttgtggttcctacatgggtgttgccatttgaacggcctaagaaagatgga
gctgcaggagggacatgggaacctgattctcggcaggtggatgtttctgagttaaacgtg
gaaactcaagaatctggttcacagccacgagtgccaggaccagcaaaagattttgtaagg
ggaagcataaataatcgtccttttcgacctgggggtttggacgattcccaatctattgat
agaattcttcctgatgcagcttctaatggtgagtgggttcatgaagttcttaatggtggc
cctgctcaatttattccacctattttaaagaaaggattggacctcggtgatctcaaggaa
tatcctaactcgtggaatgtttatgagaaccaaagttcatcttcattcaagacgtcacca
attgaaaacttgcagagtgaattgtctgtacaatttgatgatttgttcaagaaggcctgg
gaagaggatgccatagaatccgtggaagacggtcaatcaccgaaagcagaatctatcaag
tctgaagatcgggtacgtgagcttgaagccattagcattgcacctgcacctggaatatct
gccttggatgaaattttgtccctggaatctggaggattctcattaagttctgatcaagct
actgaggttggagcgcaaaagaaggaggcttgggttgtagttggtggccgtgaagacatt
tctttgcgcttccatgaccttgtacctgatatggcccttgattttcctttcgaattagac
acttttcagaaggaggctatatatcatcttgaaaagggagattctgtatttgttgctgca
catacttcggctggaaagactgttgttgcggagtatgcgtttgctctagccaccaaacac
tgtactagggccgtatatacagctcccatcaaaaccatcagtaatcagaagtatcgggat
ttttgtgggaaatttgatgttggacttctgactggcgatgttagcttgaggccagaggct
tcttgccttataatgaccaccgaaatattaaggtcaatgctttatcgaggtgctgatatt
attcgtgatattgaatgggttatatttgatgaagtgcactatgtcaatgatattgaaaga
ggtgttgtatgggaagaagttatcattatgcttccaagacatatcaatattgtccttctt
tcagccacggttccaaacacaatcgaatttgccgattggattggtcgaacgaagcaaaaa
agaattcatgtcactgggactgcaaaaagaccagtacctctggagcactgcatattctat
tctggtgaattgtataaaatatgtgaaagtgaaatttttttgtctcatggactaaaagct
gccaaagatgcatccaagaaaaaaaattcgagtgttgttggtggcgctggtggatctcat
gctggggcttcggttgcaaatgatggaacaaagaatcgaaaagttgaaagttttaacaga
agtaaacagaataagcattcgggttcccagaatttagggaacttttcaggaacaagttgg
ggtaatcaaaagaatggagatggccataacaattggggatcaaggagatcggatgcttct
ttgtggttgttacttattaataggctctcaaagaaatctctattacccgtggttatattt
tgcttctcaaaaaatcgttgtgataaatcagctgacaatatctacagtattgacctcact
agtagttctgagaaaagtgaaattcgcgtcttctgtgacaaagcattttctcgtttaaaa
ggatctgacagaagcttacctcagattgttcgagttcaaggacttcttcgtagagggatt
ggagtgcatcatgcaggtctccttccaattgttaaagaagttgttgaaatgctattttgt
cgtggtgtgataaaggtcttgttttcaacagagacgtttgcaatgggagttaatgcgcca
gcaagaacggttgtttttgacaccttaaggaagtttgacgggaaggagttcaggcaatta
ttaccaggggaatatacccaaatggcgggtcgtgctggtagaaggggactggataaaatt
ggtactgtcattgtaatgtgtcgtgaggagattccagaagagaaggatttgaagcgtgtg
atagttggaactgctaccaagcttgaatctcaattccgtttaacctatattatgatccta
catcttcttcgggtggaagagctaaaggtggaagacatgctgaaaagaagttttgcagaa
ttccacgcacagaagaaactccctgaaaagcagcaacttttaatgcgaaagctagctcaa
cctacaagaacaatagaatgtattaaaggtgaggcaaccattgaagaatactacgaccta
tatgctgaagctgagaagcctagcaaccagctctcagaagcagtcatgcaatcctctgca
attcaacaatttcttgttcctggaagagtggtcattgtaaaatcacagtcggccaaagat
cacttacttggagtaatcgtcaaagccaatatgaacaggcaatatattgttctggtgctg
atgcctgattcactacctacccaaagttcctcaagtagtgatttagaaaagaaaaaacag
gatttgacccaaggttactttatggtaccaaaatcaaaacgtggtcttgaaaatgattat
tattctccatcaacacgtaaaggatctggtcttgtcaacataagattaccacatgctggt
gcagcagtgggcataagttatgaggttagaggagttgatgccaaagattttttgtgtgtt
tgcactaaaaagattaaattagactcaggcaggcttcttgaagaagtaagcaatgttgct
tactcccagacagttcaacagcttttggatataaaatctgatgggaagtaccctccggcc
ttagatccattaaaagacttgaagttaaaagatgtgaatcttgtggaggcgtacaagaat
ttgactgacatatcgctaaagatgatagctaacaagtgccatgggtgtataaaattgggg
gagcacctgaaattagcagcagagataaagaaacacaaagaggaagtcaataacctaaag
tttcaaatgtcagacgaagcacttcaacaaatgccagattttcagggccggattgacgtt
ttaaaggaaattgggtgtataaactctgacctggttgttcaaatgaaaggtcgggttgcc
tgtgagatgaactctggggaggagttgatctgtacagagtgtttatttgagaatcaattg
gacaaccttgaacccgaagaagcagtggcattaatgtctgcttttgtgtttcagcaaaaa
aatacttctgaaccttcccttaccccaaagctgtctatggctaaaaaaagattgtacgag
acagcaataagactcggccagcttcaagcacagttcagacttcaaatcgaccctgaggaa
tatgctcgagacaatcttaagtttggacttgtcgaagtagtctatgaatgggcaaaagga
actccatttgcagatatttgtgagcttacagatgttcctgaaggtatgatagtgagaact
atagttagattagatgaaacgtgtcgagaattcaaaaacgcagcagctatcatgggtaat
tctgcactccataagaagatggaaactgcatcaaatgctataaagcgggatatcgtcttt
gctgctagtttgtacattactggactctaa
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