Entry |
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Name |
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
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KO |
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Organism |
csv Cucumis sativus (cucumber)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:csv00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101205678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:csv03041]
101205678
Enzymes [BR:csv01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101205678
Spliceosome [BR:csv03041]
Complex C
Other components
Step II factors
101205678
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
2:complement(17446802..17456506)
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AA seq |
702 aa
MAQLPILQFEEKIIETVEQNQVVVIIGETGSGKSTQLSQMLHRRGYTKSGIIGVTQPRRV
AAVSVARRVAEELGVHLGEEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSDPELGQYSV
IILDEAHERSLNTDTLMGLMKRLIRMRNSHLKVLITSATLDGDKVSKFFFDCPVLTVPGK
LHPVEILYSNERPKSYIESCLKTAIDIHTKEPEGDVLIFLTGQDDIEKLVSKLEEKVYSL
EEGSCMDAIILPLHGSLPPELQVRVFSRPPPNCRRFIAATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPE
IQRSSLAGSVLYLKSLDLPDIDILRFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIG
KTMAELPLEPSLSRTLIEANEFGCISQALTVVAMLSAETTLLPGHRKSADKKRKNRSLNL
PDGSGWGDHIQLLQIFELWDQKNYDVNWCKDHDLQVRGMLFVKDVRKQLCQIMQKIAKGS
LDVWSFRNQRESQAEYWNLRKALCVGYANQLAERMIHHNGYRTLSFKPQVVQVHPSSVMK
PDEEGKFADYVVYHELITTSRPYMRNICAVQVDWVMPILNKVKNLNVNKLSGSSADFTSG
TIEGNVKNSLKKEDANTKLTLDGHENKILAARERFLARRGKK |
NT seq |
2109 nt +upstreamnt +downstreamnt
atggcgcagctcccaattctccaattcgaggagaaaatcatcgagacagtggagcagaat
caagtggttgtcataattggagagacaggctcagggaagagtactcagctctctcaaatg
ctccaccgcagaggatacacaaagtctggtattatcggcgttactcagcctcgccgagtt
gccgccgtttctgttgctcgacgagttgctgaggagctgggtgttcatcttggtgaggaa
gtaggatatgccattcgttttgaagacagaacctcagaaagaactcgaatcaaatacctc
actgatggagtcctcctccgcgaaagtctttctgatcctgagcttggtcaatattcagtt
atcattttggatgaggctcacgagagaagcttaaatacagacacattgatggggctgatg
aaacgtttaattagaatgcgtaattcccacttgaaggttcttatcacttcagcaaccctt
gacggggacaaagtatcaaagttcttttttgattgccctgtgttgacagttcctggaaag
ttgcatcctgttgagatattgtatagcaatgaacgtccaaagagctacattgaatcatgt
ctaaaaacggctattgatatacacaccaaagaaccagaaggggacgttctcattttcttg
actggacaggatgatatagagaagttagtatcaaagttggaggaaaaagtttatagtctg
gaagaaggatcttgcatggatgctataattcttcctcttcacggttcattgccaccagaa
ctgcaggtgcgggtattcagtcgtccacctccaaattgtaggagatttattgcagcaacc
aatattgctgaaacttctttgactgttgatggtgttgtgtatgtcattgattctggttat
gtcaagcaacggcaatacaacccatcaactggcatgtactccctcgatgttgtacaaatt
agcaaagtgcaagcaaatcaacgtgctgggcgagctggaagaacacgtccagggaagtgc
tataggatgtacacttccatggattatcaagaggagttgttggatgtaacagttcctgag
atacaacgatcttctcttgctggtagcgttctttatttgaaatcattggaccttccagat
attgatattctcagatttgattttcttgatccaccaacttccgaatctttagaagatgca
ttgaagcaactatatcttattgatgctattgatgaaaatggatcgattactagaattggg
aaaacaatggctgagcttccattagaaccttcactctcacgaaccttgatagaggcaaat
gagtttggctgtatatcccaggctttgactgttgttgcaatgttatctgccgaaacgacc
ttgcttcctggtcacagaaagagtgctgataagaagaggaagaacaggtccttgaacctt
cctgatggctcaggatggggtgaccacatccagttgctacagatctttgagctctgggat
caaaagaattatgatgttaactggtgcaaagaccatgatttgcaggtaagagggatgttg
tttgtcaaagacgtacggaaacaactgtgtcaaataatgcagaaaatagccaaaggatca
ttggacgtatggtcattcagaaaccaaagggagagtcaagcagaatactggaacttgagg
aaggctttatgtgtaggctatgccaatcaacttgcagagagaatgattcatcacaatggc
tatcgaactcttagttttaagcctcaagtcgttcaggtgcatccctcgtctgttatgaag
ccagatgaagaggggaaatttgccgactatgttgtgtaccatgagctcattacaacatct
cgaccttatatgcgcaacatctgtgcagtacaggttgattgggtaatgccgatattaaac
aaggttaagaatctaaatgtaaacaaattaagtggtagcagtgctgattttacgagtggg
acaatagagggcaacgttaagaactctctaaagaaagaggatgctaacactaaattgact
cttgatggccatgaaaacaaaattctagctgctcgagaacggtttcttgcacgaagaggg
aagaagtga |