KEGG   Cucumis sativus (cucumber): 101205678
Entry
101205678         CDS       T02486                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101205678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csv03041]
    101205678
Enzymes [BR:csv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101205678
Spliceosome [BR:csv03041]
 Complex C
  Other components
   Step II factors
    101205678
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C DEAD AAA_22 AAA_19 ABC_tran nSTAND3 AAA_30 NPHP3_N AAA_16 SRP54 AAA_29 Helicase_RecD T2SSE ATPase_2 SLFN-g3_helicase nSTAND1 AAA_23 PhoH Sigma54_activ_2 FtsK_SpoIIIE MMR_HSR1 Sigma54_activat DAP3 TsaE TrwB_AAD_bind
Other DBs
NCBI-GeneID: 101205678
NCBI-ProteinID: XP_004143044
UniProt: A0A0A0LNH6
LinkDB
Position
2:complement(17446802..17456506)
AA seq 702 aa
MAQLPILQFEEKIIETVEQNQVVVIIGETGSGKSTQLSQMLHRRGYTKSGIIGVTQPRRV
AAVSVARRVAEELGVHLGEEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSDPELGQYSV
IILDEAHERSLNTDTLMGLMKRLIRMRNSHLKVLITSATLDGDKVSKFFFDCPVLTVPGK
LHPVEILYSNERPKSYIESCLKTAIDIHTKEPEGDVLIFLTGQDDIEKLVSKLEEKVYSL
EEGSCMDAIILPLHGSLPPELQVRVFSRPPPNCRRFIAATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPE
IQRSSLAGSVLYLKSLDLPDIDILRFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIG
KTMAELPLEPSLSRTLIEANEFGCISQALTVVAMLSAETTLLPGHRKSADKKRKNRSLNL
PDGSGWGDHIQLLQIFELWDQKNYDVNWCKDHDLQVRGMLFVKDVRKQLCQIMQKIAKGS
LDVWSFRNQRESQAEYWNLRKALCVGYANQLAERMIHHNGYRTLSFKPQVVQVHPSSVMK
PDEEGKFADYVVYHELITTSRPYMRNICAVQVDWVMPILNKVKNLNVNKLSGSSADFTSG
TIEGNVKNSLKKEDANTKLTLDGHENKILAARERFLARRGKK
NT seq 2109 nt   +upstreamnt  +downstreamnt
atggcgcagctcccaattctccaattcgaggagaaaatcatcgagacagtggagcagaat
caagtggttgtcataattggagagacaggctcagggaagagtactcagctctctcaaatg
ctccaccgcagaggatacacaaagtctggtattatcggcgttactcagcctcgccgagtt
gccgccgtttctgttgctcgacgagttgctgaggagctgggtgttcatcttggtgaggaa
gtaggatatgccattcgttttgaagacagaacctcagaaagaactcgaatcaaatacctc
actgatggagtcctcctccgcgaaagtctttctgatcctgagcttggtcaatattcagtt
atcattttggatgaggctcacgagagaagcttaaatacagacacattgatggggctgatg
aaacgtttaattagaatgcgtaattcccacttgaaggttcttatcacttcagcaaccctt
gacggggacaaagtatcaaagttcttttttgattgccctgtgttgacagttcctggaaag
ttgcatcctgttgagatattgtatagcaatgaacgtccaaagagctacattgaatcatgt
ctaaaaacggctattgatatacacaccaaagaaccagaaggggacgttctcattttcttg
actggacaggatgatatagagaagttagtatcaaagttggaggaaaaagtttatagtctg
gaagaaggatcttgcatggatgctataattcttcctcttcacggttcattgccaccagaa
ctgcaggtgcgggtattcagtcgtccacctccaaattgtaggagatttattgcagcaacc
aatattgctgaaacttctttgactgttgatggtgttgtgtatgtcattgattctggttat
gtcaagcaacggcaatacaacccatcaactggcatgtactccctcgatgttgtacaaatt
agcaaagtgcaagcaaatcaacgtgctgggcgagctggaagaacacgtccagggaagtgc
tataggatgtacacttccatggattatcaagaggagttgttggatgtaacagttcctgag
atacaacgatcttctcttgctggtagcgttctttatttgaaatcattggaccttccagat
attgatattctcagatttgattttcttgatccaccaacttccgaatctttagaagatgca
ttgaagcaactatatcttattgatgctattgatgaaaatggatcgattactagaattggg
aaaacaatggctgagcttccattagaaccttcactctcacgaaccttgatagaggcaaat
gagtttggctgtatatcccaggctttgactgttgttgcaatgttatctgccgaaacgacc
ttgcttcctggtcacagaaagagtgctgataagaagaggaagaacaggtccttgaacctt
cctgatggctcaggatggggtgaccacatccagttgctacagatctttgagctctgggat
caaaagaattatgatgttaactggtgcaaagaccatgatttgcaggtaagagggatgttg
tttgtcaaagacgtacggaaacaactgtgtcaaataatgcagaaaatagccaaaggatca
ttggacgtatggtcattcagaaaccaaagggagagtcaagcagaatactggaacttgagg
aaggctttatgtgtaggctatgccaatcaacttgcagagagaatgattcatcacaatggc
tatcgaactcttagttttaagcctcaagtcgttcaggtgcatccctcgtctgttatgaag
ccagatgaagaggggaaatttgccgactatgttgtgtaccatgagctcattacaacatct
cgaccttatatgcgcaacatctgtgcagtacaggttgattgggtaatgccgatattaaac
aaggttaagaatctaaatgtaaacaaattaagtggtagcagtgctgattttacgagtggg
acaatagagggcaacgttaagaactctctaaagaaagaggatgctaacactaaattgact
cttgatggccatgaaaacaaaattctagctgctcgagaacggtttcttgcacgaagaggg
aagaagtga

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