Cucumis sativus (cucumber): 101206208
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Entry
101206208 CDS
T02486
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101206208
Spliceosome [BR:
csv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101206208
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_MalT
TPR_7
TPR_12
UTP6_C
TPR_11
Motif
Other DBs
NCBI-GeneID:
101206208
NCBI-ProteinID:
XP_004140574
UniProt:
A0A0A0KF31
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All DBs
Position
6:complement(6025076..6035582)
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AA seq
831 aa
AA seq
DB search
MGDSETVVAQTSEAMGYASAGYVSSGYADSSTNLIPHPGAFQSVITGDFSVSHTSADMGD
GNAYATDPNSVQQGNHVVEVDETKADVAVTDHSQNAAVSEISAMETAASVGHDSSVNGSI
ATESVHASSVENGTVVENANEGPEEQHFVDGSVPPLSAEEDRLWNIVRANSLDFNSWTSL
IEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARFGSTDKVVEVYERAVHGV
TYSVDIWLHYCIFTLGTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWGR
LAMIYTRILENPNQQLDRYFNSFKELAASRPLSELKSSEEAVVDVQSEAGDQVNGEEGHP
EAAEPSSKTVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNV
AELDNWHSYLDFIEQEGDLNKVVKLYERCVIACANYPEYWIRYILCMQASDSMDLANNAL
ARASQVFVKRRPEIHLFAARFKEQNGDIAGARASYQLVHSEISPGLLEAIIKHANMEHRL
GNLEDAYSVYEQAIAIERGKEHSRALSLLYAQYSRFQNLVCKNEGKAREILDKAVEHGEL
SKPLIEALIHFEAIQSTGKRIDYLDSLVEKVIVPNTENATVVSASMREELSSIFLEFLNL
FGDVQSIKKAEDRHVKLFISHKSTSELKKRLADDYLASEKAKMAKTYPSVASPAQSLMGV
YPTSQNQWAASYGVQPQAWPPVAQAQGQQWAPGYTQSASYSGYGSTYTNPQVSTSVSQAS
TYATYPPTYPAQQQAYSAQTYAQPTAQATVAPSQQPASVAQPYYGSYYMNG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggggacagtgaaactgtagttgcccaaacatctgaagccatgggatatgcatctgct
ggatatgtttcgagtggctatgcagatagcagtacaaatctaattcctcatcctggcgct
tttcaatctgtgatcactggagacttttctgtttcacatacctctgcagatatgggcgac
ggtaatgcgtatgctacggatcccaattctgttcagcaaggaaatcatgttgttgaggtg
gacgagacgaaggcagatgtggcagtgaccgaccatagtcagaatgctgctgtatcagaa
atttcagcaatggaaactgcagcatcagttggtcacgattcttctgttaatggaagcatt
gctactgaatcagtccatgcgtcatcagttgagaatggaactgttgttgagaatgccaac
gagggtcctgaggaacaacactttgttgatggttctgtacctccactatctgctgaagaa
gatagactgtggaacattgtgagggccaattctttagattttaattcatggacttctttg
attgaagagacagagaaggtggcagaggacaacatactcaaaatccggagagtttacgat
gcgtttttagcggaatttcctttatgctatggttattggaagaagtatgcagaccacgag
gcacgttttggatctaccgacaaagttgttgaagtgtatgaacgagcagtacatggggtt
acttactcagttgatatttggctacattactgcatattcactcttggtacatatggagat
ccagagaccatcagaaggctttttgagagaggattagcttatgttgggacagattacctc
tcctttccactttgggataaatatattgaatatgagtacatgcagcaggaatggggtcgc
cttgccatgatatacacacgcatactggaaaatccaaatcaacagttggatcgttatttc
aatagttttaaggagctggctgctagtcgaccattgtcagaattgaagagttctgaggag
gctgtagtggatgtgcaatcagaggctggtgatcaagtaaatggggaagaaggtcatcct
gaagctgcagaaccatcatctaaaactgtaagtgctggcttaacagaagcagaggagttg
gagaagtatatcgccattagagaagaaatctataagaaagctaaagagttcgattctaag
atcattggttttgaaacagctatcagaaggccctactttcatgttcggccacttaatgtt
gcagagcttgacaattggcatagttacctggattttatagagcaagaaggagacttaaat
aaggtggtgaaattgtacgagagatgtgtgattgcttgtgccaactatcctgagtactgg
atacggtatattttatgcatgcaagcaagtgatagtatggatcttgccaataatgccctt
gctcgggcaagccaagtttttgtcaagaggcgaccagagattcatttatttgctgcccgg
ttcaaggagcaaaatggagatattgctggtgctcgtgcgtcctatcaacttgtgcatagt
gaaatttcacctggccttcttgaagcaattattaagcatgctaatatggaacatcgtttg
ggaaacctggaagatgcatactctgtatatgaacaggcgattgctattgaacgagggaaa
gagcattctcgtgcattgtcactgttatacgctcagtactcaaggtttcagaacttggta
tgtaagaatgaaggaaaagctagagaaattctggataaggcagttgagcatggtgaatta
tccaaaccacttattgaggccttgatacattttgaggcaattcagtctacgggaaagaga
attgattatttagattcattagttgaaaaggtcatagtgcccaacacagagaatgcaacg
gttgtgagtgcttcaatgagggaggagttatcaagcattttcttggagtttctgaatctc
tttggagatgttcagtcaatcaaaaaagctgaggacagacatgtaaagctgttcatttca
cataagagtacatcggaactgaaaaaacgccttgcggatgattatctagcctctgaaaaa
gcaaaaatggccaaaacctatcccagtgtggcttcaccagcacaatctttgatgggtgtt
tatccaactagtcaaaatcaatgggcagctagctatggtgtacaaccacaagcttggcct
cctgttgctcaagcacaggggcaacaatgggcaccaggttatacccaatcggcctcgtat
agtgggtatggaagcacatacacgaatccacaagtgtccacatcggtgtcacaagcctcc
acttacgcgacgtatcctcctacataccctgcccagcagcaggcgtattctgctcagact
tatgcccaaccaaccgctcaagcaacagtcgcaccatcgcagcagccggcttcagtcgct
cagccgtattacgggagttactatatgaatggatga
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