Cucumis sativus (cucumber): 101206270
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Entry
101206270 CDS
T02486
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101206270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101206270
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101206270
Spliceosome [BR:
csv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101206270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
PWI
nSTAND3
SRP54
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
101206270
NCBI-ProteinID:
XP_011660328
UniProt:
A0A0A0LUM2
LinkDB
All DBs
Position
1:complement(1759752..1773064)
Genome browser
AA seq
1055 aa
AA seq
DB search
MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL
AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQTTYALLDADDEDDVEDKGRSSDLKE
TENRKKHFRRKNEYQEDEDDEKESALERENRQVKRRQRASSSEDESSESEEERLRDQRER
EQLERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSEALENDGIDTLRKVSRQEYLKKREE
KKLEEIRDDIEDEQYLFEGVKLTDAEYRELKYKKEIYELVKKRTDEADDINEYRMPEAYD
QEGGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEEHQIGKATMKFGSKNKKQSSDDY
QFVFEDQIEFIKASVMEGDEFVDERQTESLEKSKAQSALEKLQEERKTLPIYPYRDQLLQ
AVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGV
KLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDV
LFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADY
LDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANL
PTELQAKIFEPTPDGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMEALQV
SPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLG
IHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKLGRRMAEFPLDPMLSKMMVAS
EKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRE
TNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGYFPH
SAKLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLV
EIAPHFYQLKDVEDLSSKKMPRGQGRASAPGEAGS
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggggggcgaaaatgacttgaaaacatgggtttcggatcagttaatgtcattgcttggt
ttttctcagccaacgatcgtgcagtatatgattggactatccaaacaagcaacatcacct
gccgatgttgtgaacaagttggtgatagatttttccttgccatcttctggtgaaacactg
gcttttgctgaaggaattttctccagagtgccacgcaagcaatcatctggtttaaatctt
tatcagaagcaagagagagaagcagcaatgttggcaagaaagcaaacaacatatgcacta
cttgatgctgatgacgaagatgatgttgaagataaaggacgcagcagtgatctcaaagaa
acagaaaaccgaaagaaacattttagaaggaaaaatgaatatcaagaagatgaagatgat
gaaaaggaaagtgctcttgaaagagaaaatagacaggttaaacgacggcaacgggcatcc
agttctgaagatgaaagctctgagtcggaggaggagcgattacgagatcaaagagagagg
gagcaattagagcgaaatataagggaaagggatgctgcaggaaccaagaagttaacagag
caaaaattgagcaggaaggaggaagaagaggcaattcggagatcagaagctttggagaat
gatggaattgatactttgaggaaagtttcaagacaggagtatttaaagaaaagggaggag
aagaaactggaagaaatcagagatgatatagaagatgagcaatatctttttgaaggtgtg
aagcttactgatgcagaatatcgggagctaaagtataagaaggaaatatatgagcttgtg
aagaagcggacagacgaggctgatgacatcaatgagtacaggatgcctgaagcttatgat
caggaagggggtgttaatcaggataagaggtttgcggtggctatgcagcggtatagggat
tcaggtgctgctgataaaatgaacccgtttgcagaacaagaggcatgggaggaacaccaa
atagggaaagcaacgatgaaatttggttcgaaaaacaaaaagcaatcatcagatgactat
cagtttgtatttgaggatcagattgagtttattaaggcatcagttatggaaggtgatgag
tttgttgatgagcgtcagactgaatcacttgagaagtccaaggctcagtcagctctggag
aagctgcaggaggagaggaaaacactgccaatctatccatatcgtgatcagttacttcaa
gctgtcaacgattatcaggttcttgtgattgttggtgaaactggctctgggaagaccaca
cagatacctcaatatcttcatgaagctgggtacacaaagcgaggaaaagttggatgcaca
caaccacgtcgagttgctgctatgagcattgctgctcgagtatctcaagaactgggtgtc
aagcttgggcatgaggttggttattcaatacgttttgaggactgtacgtcagataagact
gttttaaagtacatgacagatgggatgttgttacgagaattccttggtgaacctgacctt
gcaagctacagtgtcgtaatggtggatgaggctcatgaaagaacattatcaactgatgtt
ctatttggattagtgaaggacattgctaggtttcgacctgatttaaagttgctaatttca
agtgcaacacttgatgctgagaagttcagtgattactttgattcggctccaatatttaaa
attcctggtagacgttatccggtagaaattaacttcacaaaagctccagaagcagactat
ttagatgcagcaatcgtgactgcacttcagatccatgtcacaaagcctccaggagatata
ttggtgtttctcactggtcaagaagagattgaagcggctgaggaaataatgaaacataga
actcggggactgggcaccaaaattgcagaactcattatatgccccatatatgctaactta
ccaacagagctacaggctaagatatttgaacccacacccgatggagcaaggaaagttgtt
ctagcaactaatatagcagagacatccttgacgattgatgggataaaatatgtcattgat
cctggtttttcaaaaataaagtcctataacccaaggactgggatggaggcgttgcaagtg
agtcctatctctaaagcatcggcaaatcagagagcaggtcgttctggacgaacaggccct
gggatgtgctttcgtttgtatactgcttatagttattataatgagatggaagacaataca
gtacccgaaatacaaagaacaaaccttgctaatgtggtgcttacacttaagagccttggt
attcatgatttggtaaattttgattttatggaccagcctccatctgaagcattgctaaaa
gctttggaactgctttatgctcttggtgctctaaataaacttggtgaattaactaagttg
ggtaggcggatggcagagtttcctcttgaccccatgctttctaagatgatggttgcgtct
gaaaaattcaagtgttcagatgagattatttctattgcagctatgctttctattggaaat
tctattttttaccgtcctaaggataaacaagttcatgcagacaatgctcggatgaatttt
cacactgggaatgtgggggatcacattgcactattgaaggtctacaactcatggagggaa
actaattactctacgcaatggtgctacgagaactacatccaggttagaagtatgaaacgt
gccagagatatcagagatcaacttgaagggcttttggaaagagttgaaatcgaattaact
tcaaatttgaatgacttagatgcgataaagaagactataatatctggatatttccctcac
tctgctaagttgcaaaagaatggctcttatcggactgttaaacatccgcagacggttcat
atacatcccagctcagggttggctcaggttcttccaagatgggttgtataccatgaattg
gtatgtacctcaaaagagtacatgagacaggtaacggagttgaagcctgaatggttggtt
gaaattgctccacacttctatcagctcaaggatgttgaagatttgagttcaaagaagatg
cctcgcggacaaggtcgtgccagtgctcctggagaagcaggaagttaa
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integrated database retrieval system
