Cucumis sativus (cucumber): 101206347
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Entry
101206347 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101206347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101206347
03009 Ribosome biogenesis [BR:
csv03009
]
101206347
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101206347
Spliceosome [BR:
csv03041
]
Complex A
U1 snRNP components
U1 related factors
101206347
Complex B
101206347
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
Pre-60S particles
Helicases
101206347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
101206347
NCBI-ProteinID:
XP_004134467
LinkDB
All DBs
Position
3:10523223..10532387
Genome browser
AA seq
1152 aa
AA seq
DB search
METGDSAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLSYYWNPETNVTQYEKPVSLPPPLP
LGPHPGVSISKPTSIPEAHSMPSSGTVAPHVQQNHYNIPQQDGQLNNQLSQQPGHLISQQ
HSSVASQVAVNHHPGMQMAPDGRQHGSQSNQVMQQQGVFGMSSQHIGQQQVMHQGQNMAH
ANQQMSQHPNQQPLQNPGQALQNPGQQMPQPSVQHLGQPNMHNPKPLVGQPQGPQYGQQQ
LQYIGYQQSLHPNVQQNSQQQVQQSPLVQPFGNHLEQKPAFLKREEENIQSGNQVGFSSS
QFQQSGGTPSIHNLHSGTNSSQMQPLGLASDQARQFGSSPGNMQQQLPVGQVQHAGTELT
HRHHHSRFQDQMGPAVIPGQQPVAENLPGRGGNEYYFGRNEGSGPGPHQPRLAAIPMARS
QQDSRMSGAPFPSAAPGHPSGTKFAGGPTHNLYNHGSGGSSLPNNALMGPPHVGASDVTN
MSPVEVYRRQHEVTATGDNVPAPFMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIAL
QGRDIVAIAKTGSGKTLGYLLPAFILLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKF
GRSSRVCCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLVLDEA
DRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAA
NKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIH
GDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIGRT
GRAGATGVAYTFFSEQDWKFASDLIKVLEGAGQPVPPELRNMAMRGGPSFGKDRGGMGRF
DAAMGGSRWDSGGRGGMSDAGFGGRSGARDGGFGGHGGFGGRGGMRDGPGGRGGRGDFFS
TRGRGRGFGGPLGGHVGWGRGDRGPPHDRFNGVDGRGRGRGQGRFDNRRDFSNRSRGRSY
SRSPERVRTWGYSRSRSRSRSGSHSRSSRSWSRSRSRSRSRSRSRSWSRRYSRSRSHDNN
ERPRVRNFDKKDDQPLESVGAASPGTQKNGFEEKDVRELAPIPGSSSSMEATNPENGVDT
SDQIVNATAEVI
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggggactctgctcccccttcccttggtcctcgctatgccccagatgaccct
actcttccgaaaccttggaagggattgattgatgggagcactggactatcatactactgg
aaccctgaaaccaacgttactcagtatgagaagccagtctctttgccaccaccattaccg
cttggtcctcatcctggcgtttctatttccaagcctacttcgattccggaggctcattca
atgccatcaagtggcacagtggcacctcatgtacaacaaaatcattacaacatccctcaa
caagatggccaattaaacaaccagctttctcaacaacctggacatctgatctcacagcag
cacagttctgttgccagtcaggtagctgttaatcaccatcctggcatgcaaatggctcca
gatgggcgacagcatggctcgcaatcgaaccaagtcatgcagcagcagggggtgtttgga
atgtcatcacaacatattggccaacagcaggtcatgcatcaaggtcagaacatggctcat
gcaaatcaacaaatgtctcaacatcctaaccagcaacccctgcagaatccaggacaagcc
ttacagaatccggggcaacaaatgccacaaccatcggtccagcatttaggacagccaaac
atgcataatccgaagccattagttgggcagcctcaaggtccacaatatggtcagcagcag
cttcaatatatcggttatcagcaaagcctacatccaaacgtgcagcaaaattcacagcag
caagttcaacaaagtcctttagtccagccatttggcaatcacctcgagcagaagccggct
tttctgaagagagaggaggagaatatccagtcaggaaaccaagttggattttcttcttcc
cagtttcaacaaagtggtggtaccccatccattcataacctacattcgggaacaaattct
tctcaaatgcaaccattgggtttagcatcagatcaagcacggcaatttggtagctctccg
ggaaacatgcaacagcaactccctgtgggtcaagtgcagcatgcaggcactgaattgact
caccgccatcatcattctagattccaagatcaaatgggcccagctgtgattccggggcag
caacctgttgctgaaaatttgccaggcagaggtggaaatgaatattactttggcaggaat
gaggggtctggccccggtccacatcagccaaggcttgcagcaataccaatggcaaggagc
cagcaggactcaaggatgagtggtgccccatttccaagtgcagcacccggtcatcctagt
gggacaaagttcgcaggtggtcccacacataatttgtacaaccatggatctggtggttca
tcattgccgaataatgcattgatggggcctcctcatgttggagcttcagatgttactaat
atgtcacctgttgaagtttatcgtcgacagcatgaagtaactgcaacgggtgataatgtt
ccagctccattcatgacatttgaggctactggcttccctccggagatactgagagagata
tattctgctggtttctcatctcctacgccaattcaagcacaaacatggcccattgccctg
caaggtcgggacatagtcgccattgctaaaacagggtctgggaaaactctgggctatttg
cttcctgccttcattcttctgaggcagtgccgaaataaccctcaaaatggaccgactgtg
ttggttctggctcctactagggagcttgctactcaaatacaagatgaagccattaaattt
gggagatcttctcgggtttgttgtacgtgcttgtatggtggagcccctaaaggtcctcaa
ttaaaagagttagatcgtggtgctgatattgtggtggctactcctggacggcttaatgat
atacttgaaatgaagatgatcaactttaggcaaatttcactgcttgtgcttgatgaagct
gatcggatgctggatatgggatttgaaccccaaattaggaaaattgtgaatgaaatacca
ccacgtagacaaactctcatgtatacagcaacctggcccaaggaagtaagaaaaatagca
aatgatcttcttgtgaattctgtccaagtgaatattggtagcgttgatgaacttgctgct
aacaaagctatcacacagtatgttgaagtcgtaccacagatggaaaaacagagacggttg
gaacaaatccttagatcccaagaacggggttctaaggtaataattttttgttccacgaag
aggttgtgtgatcagcttgcacgaaatcttgggcgtggttttggagctgctgcaattcat
ggagacaaatcacagggggagcgtgactgggtattgaaccagtttcgtagtggaaagtcc
ccgatactagttgccactgacgttgctgctcgtgggcttgacatcaaagatataagagtg
gtgatcaactttgattttccaactggaatcgaggactatgtccaccgaattggaagaact
gggagggctggagcaaccggagtggcatataccttcttctctgaacaggattggaaattt
gcttctgatttgattaaagtactggaaggtgcaggccagcctgttcctcctgagttgcga
aatatggctatgcgtggtgggccgagtttcgggaaggataggggtggaatgggtcgtttt
gatgcagctatgggtggcagtcgctgggattcaggaggccggggtggcatgagtgatgct
gggtttggtggtcgtagtggtgcaagggatggagggtttggtggccatggtgggtttggt
ggtcgtggtgggatgagagatggtcctggtggacgaggtgggagaggtgatttcttttcc
acacggggtagaggacgggggtttggtggacctctgggaggtcatgttggttggggcagg
ggtgatcgtggtcccccacacgataggttcaatggtgtggatggacgtggacgtggacgt
ggacagggtcgatttgataacagaagagacttcagcaataggagtagaggcagaagttac
agtcgtagtcctgaaagagtccggacatggggttatagtcgaagtcgaagtcgaagtcgc
agtggtagccatagtcgcagtagtagaagctggagtcggagtcgaagtcgtagcaggagt
agaagcaggagtcggagttggtcccgccgttatagccgaagccgtagccacgataataac
gagcgaccacgtgtccgaaactttgataaaaaagacgaccaacctctcgaatcagtaggt
gcagcgtctcctggcacacaaaagaacggttttgaagaaaaagatgtgagggagcttgct
ccaatacccgggagcagtagtagtatggaggcaacaaatccagaaaatggtgttgataca
agtgatcaaattgttaatgcaacggctgaagtaatatga
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