Cucumis sativus (cucumber): 101206503
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Entry
101206503 CDS
T02486
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101206503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101206503
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101206503
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
LisH_CTF50
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
ASA1
DSE1_N
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Cytochrom_D1
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_NOL10_N
PAC11
Ge1_WD40
Beta-prop_VPS8
Beta-prop_IFT140_1st
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
101206503
NCBI-ProteinID:
XP_011650275
UniProt:
A0A0A0LVN0
LinkDB
All DBs
Position
1
Genome browser
AA seq
437 aa
AA seq
DB search
MEGSFEQTLQDGQLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDVPPKKLMELVA
KGLAVEKDETLRGSPASALYEFGSSMPTTFGSAQPSRPSAIDFSTTQDTKGSSKNFPKHE
TRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTF
YDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSG
DYLLAGTDHQIPHLYDVNTFQCFLSANVPEIGNNGAINQIRYSATGSMYVTASKDGAVRL
WDGIGAKCIRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGAT
HIQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESA
FISCGTDKSIRFWKESL
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcagcttcgaacagacccttcaagatggacagctttacagacaagtcaattct
ctcattgtcgctcatcttcgtgatcacaacctcacccaggctgcaagtgctgctgcttca
gctacaatgacaccactgaatgttgatgttccacctaaaaagcttatggagctcgttgca
aagggccttgcggtggagaaagatgagacgttaagagggagtcctgcttctgcattgtat
gaatttggttcatcaatgcccactacatttggatctgcacagccctctcgtccttctgct
atcgacttcagcactacacaggatacaaaaggttcgtcgaagaattttccaaagcacgag
actcgacatctttctgagcataagaatgttgccagatgtgcaagattcagtgctgatggg
agatttgttgcaactggaagcgctgatatgtcaataaagctgtttgaggtggcaaagatc
aagcagatgatgctgccagatgcaaaagatggtcctgtccgaccagttataaggacattt
tatgatcacattcaaccaataaatgatttagattttcatcctcagaatactgttcttgta
tctggtgcaaaagatcacacaataaagttctttgacttctccaaattgactgcaaagaaa
gcatttcgagttatccaggatactcataacgtgcgatctatatctcttcatccttcagga
gattatctcttagcaggaacggatcatcagattccccacttgtatgatgtcaatactttt
cagtgttttctatccgcaaatgttcctgaaataggaaataatggagcaataaatcagatc
aggtattcggcaacaggtagtatgtatgtcactgcttcgaaagacggcgcagttcgttta
tgggacggcattggtgcaaaatgtattcggtccattgttagtgcacatggcacagcagag
gccaccagtgcaaaatttacaaaggatgaaaggtatgttctttcttgtggaaaggactcg
agtgtaaagctatgggacgtggggacagggagactagtcaaacaatatgttggcgccact
catattcaattgaggtgtcaggctgtattcaatgatactgaggagtttgtgctatcaata
gacgaaccaagcaatgagattgttatttgggatgctttgacagcagagagagtagcaagg
tggccttctaaccatgtcggtgcacctcgatggctcgagcactcaccaacagagtcggcc
ttcatttcctgcgggactgataaatcgatacgtttttggaaggaaagtctctag
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