Cucumis sativus (cucumber): 101206586
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Entry
101206586 CDS
T02486
Name
(RefSeq) chromatin structure-remodeling complex protein SYD isoform X1
Organism
csv
Cucumis sativus (cucumber)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
ResIII
DEAD
DEAD_2
GCM
DUF6813
IKKbetaNEMObind
Motif
Other DBs
NCBI-GeneID:
101206586
NCBI-ProteinID:
XP_011651020
LinkDB
All DBs
Position
3:complement(10542827..10565046)
Genome browser
AA seq
3360 aa
AA seq
DB search
MAASQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET
VINQHGLDIEALRASRLPLTGGTQMGDSSTAQYAVAGSSSVVGAGKDSKMGISGSEMSKS
SPLASSKPPVGPSSTDHDYYPGSATHRSGQSFDQESPSSLDSRSANSQSQEKHDSVNWAK
QLNDKDGKKGSKKRKKVDTSVVEPPSDNTHQLDTRNSLVNSRNVKTNRVEPTAYLAKGGN
IEQVKHGLTKATEKPIDPQLYSVNRGDGTSTSNEKVLESELPMPSTSSVDATKMIQGTWR
NNGPEMSMLRNSVSREAGKLPVSQVPTPSQSRLPFKEQQLKQLRAQCLVFLAFRNGLMPK
KLHLEIALGNNFPKEEGLRKDVDPRGISQSFNEARSSNEGMMPSGKLDAGRETGMVAPGA
VSAGRTFEADSMKDIDNRRVEEKKVTSSDYSVQAEVRKAEAEGMREKTTAQTCLSSGSHP
PDFSGTRGVLTANNPVEDLENSNLQATAAAGISKPLNPETVGWTGIGSTNEISRVSLPAF
ASQHELVVDRKNDVSAQLHIVRNNSGLGSQHIDSQSSFSMGERWKPISGTYDQYHAVMPS
RDASVIPNIASHDDMHVPESESRCITEVQKVASIDEGKNGSLNTMEQEDNGKSMPSDLPM
SPKNTMSEKWIMDRQKKKLLNEQNWLLKQQKTEKRIITCFDKLKETVSSSEDISAKTRSV
IELKKLQLLQLQRRLRNDFLNDFFKPISTEMDRLKSFKKHKHGRRIKQLEKFEQRMKEER
QKRIRERQKEFFGEIEVHKERLDDVFKVKRERWKGFNKYVKEFHKRKERIHREKIDRIQR
EKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSMASDMDDGGAV
NVAEKSEAAIENEDEAKHYLESNEKYYMMAHSVKESIAEQPSCLQGGKLREYQMNGLRWL
VSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFW
APSVLKIVYSGPPEERRKLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDE
GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF
NKPFESNGDNSADQALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCE
ASAYQKLLMRRVEDNLGSIGSTKVRSVHNSVMELRNICNHPYLSQLHAEEVDNLIPKHYL
PPIVRLCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLQWKQYRYLRLDGHTSG
GDRGALIELFNRQNSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHR
IGQKRDVLVLRFETVQTVEEQVRAAAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLR
ECKKEEASPVLDDDALNDLLARSESEIDVFETVDKERQEHEMATWKKLVLGHGISEPVPS
IPSRLVTDDDLKVFYETMKITEEVPKAGEASHAGVKRKSEYLGSLDTQHYGRGKRAREVR
SYEEQWTEEEFEKMCKVDSPESPRSKEAVAGEPSASVSGSVEAAVLKTEEPASSPLAPAQ
PLAPVQPLAPVQPLAPVQPMPQHQTPPSKRGRGRPKRSTVDKLPAPVVPLPSLSITAKTE
TGLQGETISSISKTGCLDSLPGQGITGQIASGAAPNSLLTTPVPSIIPASESAPACSPAP
IQAKGHGRKTQTGQEAPRRRGKKQGIVPPPVPCSQSSDLRQDDLSPGKLTNPVAGQVNVA
SEVVSNASATQPPTSFPGSTPSKPVTGPNDQPAIGVSSNLEPSAAMPSVSSTSQIAPNLI
PKPVQPRGPYRKTQSAAGAPRRRGKKQAGPTPALPNTMAAASLSSNMNLQKNHMDSSSSK
AVVSPKENIVNQATNIISEQLHQITGPGLESSKSTDNSNQGKETVSLSTSVSTVGPQGCT
EQSQNTEHLSKSTGAAQDATISNNIVDETLKTHSLQDTPAVPVCGPPTTSLSSSVTVELS
PKTVIDVAPETAPSSQSIHSLPSVASTLQPASQSPPPGFVQPKRQGRKTPRNRDEPPRRR
GRKPAALAPVVPDGGSVSKEAKDLNVHVQPAQMGDSSSKDTCLKGKTGTENLESTSVQNV
AGVTQIVDTVHSLGPKRKEQAPKTAQHKQLLASSTKSDATGTLDRTTISGRYQTANVNDV
ARVMKEVFSGTGLSKAKVGESSGKESKDAPAMPVLSKSSVEVIRNNQSEATLATVLNSNI
PVGAHELESSVRPGSANASEECIIPTIDEENCASSKANAVNILVESREMSAACSIVASGS
GISSNFNNADHNPPEGSTISSSLVDCNSSKTPKVTDDALKSETKPVSGELLKSSPDRSSY
EVPSSLNNDGASHPAPTLPVASDSSHTNMITAPCTNQENNGCQSLSGHHENLDHSGITSF
DESSDALMSGAEPDVQGCLSVATMDIERKNNEVNDVAPILEQMDPATKQDVDIVLGKSSG
SVDHADTGASDMVKEASGNKLELASEGLPNFPSSDDGNAKVQEVCAGSPDDSNIAKSNRG
SLEFDLVPPRVDAAECFIKTDVEEQKAPELNTSSKCILEENLNVPEKKEKVMENNAEFGE
PKDVPEPIAPTQDNEDNKGDNHDACLMDVDVSRNDDLDESDAGGLIPADTSPSTSVRPNE
SKSSDAIVQTDMSDGEHVPEDTTATKVLPSSSQEGVENCSFTSVVDQVDSLGKLEEPKNI
GVSANLQVIVSQDDVISENLVREDSNDTSIALQEGKIEGSGEINRGSPSEERQSDPQVEE
VLVDRIEEDKSGNLAQPLSSTEVKEINMMVLPTSLDNSGDQTDLPESSSTMTDREIIGNS
CKDDLQECTVTDSIKTLQDSRELPKELSQVSAVFASTNSNEESPQLDPPQLDPLSSPVSL
ERPSDNPMSSDHMVATHDNIVLSENVSSVLLVSEENKRQSSSEKSLSDSAEPLEDCKDSD
NSSDRLVITQVNKEQLLSISENLVSVDSSNHMEVSTSDQINVPQTEESVPVNPVDTLNQP
LPSTSTMEEDKSETSFDSGLIAVPLLLTDVLQTETEPMDTSQPGGILEDASGETILPSSS
LLEEVGEPSLDKAVTASPSSLPVENESMERSPVSSPADNAIAVVETVVCDEANVSTENER
CPPADCAGDLEMAICNEADVPPVSDTVQDPANSVTSVELAIRDEVDVPPVCDSANAPADT
STICDQADAAPPADTSTICDQADAAPPADTSTICDQADAAPPASELKQDPVDSTLACDQA
DVSPVSDSLPENKSPNLDLPPGSPPVKDEITVETQERSPEETPVDKSSVESETEDPKQSE
NT seq
10083 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatcacaaaatgttgagttggaagcagcgaaatttctgcacaaacttattcaa
gaatctagagatgagccagcaaaattggctacgaaactctatgtgatactgcaacacatg
aaatcaagtgggaaagagcattcgatgccatatcaagtaatttcgagggccatggagact
gtcatcaaccaacatggtcttgatattgaagctttgagggcatcacgccttcctttgact
ggtggaactcagatgggcgattcttcaactgcacaatatgcagttgcaggttcttccagc
gttgttggtgctggtaaagattccaaaatgggtatatctggaagtgagatgtctaaaagt
agcccactggcttcaagcaagccgcctgttggcccaagtagtacagatcacgactattat
ccaggttctgcaactcatcggagtggtcaatcttttgatcaagaaagtccatctagtttg
gattcaaggtctgccaactcacagtcacaagagaagcatgattcagtgaattgggccaag
caattaaatgataaggatggtaaaaagggcagcaagaagaggaagaaggtggatacatca
gttgtggagccacctagcgacaatactcatcaacttgatacacgcaactcattggttaat
tctaggaatgtaaagacgaacagggttgaaccgacggcatatctagctaaaggaggcaat
attgagcaggtaaagcatggattgaccaaagctacagaaaagcctattgaccctcaattg
tattctgtaaaccgcggtgatgggacatctacctccaatgaaaaagttttggagagtgaa
ctacccatgcctagcacatcatcagttgatgctacgaaaatgatccaaggtacatggcgg
aacaatggaccagaaatgagcatgttgcgcaactcagtttctagagaagcaggaaagctt
cctgtttctcaggttcctaccccatcccaatcacgtttgcctttcaaggaacaacaattg
aaacaacttagggcgcagtgccttgtgtttttagcattcagaaatggtttgatgccaaag
aaactgcaccttgaaattgccctggggaataattttcctaaagaagaggggcttcgcaaa
gatgttgatcctagaggtatttctcaatcttttaatgaggccagaagttccaatgaagga
atgatgccatctggaaaattggatgctggaagggaaacaggtatggtggccccgggtgcg
gtatctgctggaagaacctttgaagctgattccatgaaagatatagataataggagagtg
gaggaaaaaaaggttacatcttctgactattctgttcaagcagaagtaagaaaggcagag
gctgaaggtatgcgggaaaagacaactgctcaaacatgcttgagctctggatcacatccg
cctgacttttcaggtacaaggggggttttaactgcaaataatcctgttgaagatttggag
aatagcaatcttcaagccactgctgcagcgggtataagcaagccattgaaccctgaaaca
gttggctggacaggaattggaagcacaaatgagatttctagggtaagtctaccggcgttt
gctagtcagcatgagctggtagttgataggaagaatgatgtatctgctcagttgcacatt
gttcggaacaatagtggattggggagtcaacatattgatagtcagtcttctttttcaatg
ggagaacggtggaagcctatctctgggacatatgatcaataccatgctgtcatgccctct
agagatgctagtgtgatcccaaatattgcatctcatgatgatatgcatgtgccagaatct
gaatccagatgcatcacagaagtgcaaaaagtggcatctattgatgaagggaaaaatggc
agcctaaatactatggaacaagaagacaatggtaagtcaatgccatctgatttgccgatg
tctccaaagaacaccatgtcagagaaatggataatggatcggcagaaaaagaaactccta
aatgagcaaaattggttactgaaacaacaaaaaactgagaaacgtattatcacctgtttt
gataagttaaaggaaactgtcagctcgtcagaagatatatctgcaaaaactagaagtgtt
atagaattgaaaaagcttcaactcttgcagcttcagcgccggctcaggaatgattttctc
aatgatttcttcaaaccaatttcaactgagatggaccgattgaaatctttcaagaagcat
aaacatggtaggaggattaaacaacttgaaaaatttgagcagagaatgaaggaggagagg
cagaagagaattcgggagaggcaaaaggaattctttggtgagatagaagttcacaaggaa
agacttgatgacgtatttaaagttaagagagagaggtggaagggtttcaataagtatgtt
aaggagttccacaaaaggaaggaacgaattcatcgtgagaagattgacagaatccagcgt
gagaagatcaatcttttgaagatcaacgatgtagaggggtatcttcgaatggtgcaggat
gcaaaatcagatcgtgttaagcaacttctcaaggagactgaaaaatatcttcaaaagctt
ggatccaagcttcaagaggcaaagtccatggcaagcgatatggatgatggaggagctgtg
aatgttgctgaaaagagtgaagctgcgattgaaaatgaagatgaggcaaagcattattta
gaaagtaacgagaagtactacatgatggctcatagtgttaaggaaagcatagctgagcag
ccttcttgtcttcagggaggaaagttgagggagtatcagatgaatgggcttcggtggctt
gtttctctgtataacaaccatttgaatggaattcttgccgatgaaatggggcttggaaaa
actgttcaggtaatttccctaatctgttatttaatggagactaaaaatgatcgaggtccc
tttttggtggttgtgccatcatccgttttacccggatgggagtcagagatcaacttctgg
gcccctagtgtgcttaaaatcgtgtattctgggcctccagaagagcggcgtaaattattc
aaagagagaattgttcatcagaaatttaatgtactactgaccacatacgaatatctgatg
aacaagcatgataggccaaaactgagcaagattcattggcactacatcataattgatgaa
ggccatcgtataaagaatgcttcctgcaaattgaatgcggatctaaagcactatcagagt
tctcacagattactcttgactggaacaccactacagaacaatcttgaagagctgtgggca
ttactaaactttttgttgccaaatatttttaattcatcagaggatttttcacagtggttc
aacaaaccatttgagagtaatggtgataattcagctgaccaagctttgctttctgaagag
gagaatcttttgatcataaatcgactgcaccaagtgcttcgcccgtttgttcttcggagg
cttaaacacaaggtggaaaatgaactgccagaaaagattgaaagacttgtaagatgtgag
gcttctgcatatcagaaacttttgatgaggagagtagaggataaccttggttcaatagga
agcacaaaggtccggtcagtgcataattcagtgatggagctgcgtaatatttgcaatcat
ccttatctaagccaacttcatgcagaggaggttgataatttgatacctaagcattacctg
ccacccattgttagactctgtgggaagctggagatgttagatagaatattaccaaagcta
aaagcaactgatcatcgggttctcttcttttccaccatgactagactgctagatgttatg
gaggaatatcttcagtggaaacaatatcgatatctacgattggatggacatacgtctggg
ggtgatcgtggtgcactaattgagttatttaaccggcaaaattctccctactttatattc
cttcttagcattcgagcgggtggtgtgggagtgaatctccaagctgctgatacagtgatt
atcttcgacacagactggaatccacaggttgatctacaagcacaggctagggctcataga
attgggcagaagagggacgtacttgttcttagatttgaaacagttcaaactgtagaagaa
caagtgagagctgctgcggagcataaactaggagtggctaatcaaagtattacagctggt
ttttttgacaacaatacaagtgctgaagatcgaagagaatatttggaatctcttctacgt
gagtgtaagaaagaagaagcttcacctgtactagatgatgatgctctgaatgatctccta
gcacgcagtgagtcagagatagatgtgtttgaaacagttgacaaagaacggcaagagcat
gagatggcgacatggaagaagctggtacttggccatggaatttctgagcctgttccttcc
atcccttcacgtcttgtaacagatgatgacctgaaagtattctacgaaacaatgaagata
actgaagaagtaccaaaagctggggaggcttcccatgcaggggtcaagaggaagagtgaa
tatcttggaagccttgacacccaacactatgggagggggaagcgggcaagagaggtgcga
tcctatgaggaacagtggacagaagaggaatttgaaaagatgtgcaaggttgactcccct
gaatcccctaggtcaaaggaagctgtggcaggagaaccatcggccagtgttagtggatca
gttgaagcggctgttttgaagacagaagaacctgcttcctctcctctggctcctgctcag
cccttggctcctgttcagcccttggctcctgttcagcctttggctcctgttcagcctatg
ccccagcatcaaacaccaccttcgaagcgaggtcgtggaagaccaaaaagatcaactgtt
gataagctgcctgctccagtggttcctcttccatctctttctataacagccaaaacggaa
acggggttacagggggaaactatttcaagcatttctaaaactggctgtcttgattctttg
cctggtcaaggaataactggtcaaattgcttcaggggctgctccaaattctctgttaact
accccagtgcctagtattattcctgcctctgaatcagctccagcttgctcccctgcacca
attcaagcgaaaggtcatggtcgaaaaactcaaactggacaagaagctcctcggagaagg
gggaaaaaacaggggatagtaccacctcctgttccttgcagtcaatcctccgatttaaga
caagatgacctatcgccgggtaaattgacaaatccagtggcaggtcaagttaatgttgca
agcgaagttgtttctaatgcttctgccacacagcctcccacttctttccctggttctacc
ccttcaaaacctgtcactggacctaatgatcaacctgccattggggtttcatcaaatttg
gaacctagtgctgctatgccttctgtgtcttctacatctcaaattgcccctaatttaatt
cctaaacctgtacagcccagaggaccatatcggaagactcaaagtgctgctggagcgcca
cgacgtagaggaaagaaacaggcaggaccaactcctgcattacctaacaccatggctgct
gctagtctaagctcaaatatgaatttgcaaaagaaccatatggattcttcttcaagtaag
gctgttgtcagtcctaaagaaaatatagtcaatcaggcaaccaatattatctctgagcaa
ttgcatcaaatcactggaccaggtttggaatcttctaaatcaacagataattccaatcag
ggcaaggagacagtgagcttgtcaacttctgttagtactgtgggaccacaagggtgtaca
gaacaaagtcaaaatactgaacacttgagtaagagtactggtgctgcccaggatgcaact
atatccaataacattgtggatgagactttgaagacccatagtttgcaagacacacctgca
gttccagtatgtggtcctccaaccacctctttatctagttctgttactgtggagttgagt
cccaaaactgttatagatgttgctccagagactgctcctagttcccagtcaatccattca
ttaccgtcagtggcttcaaccttgcaacctgcctctcaatctccgccacccggatttgtg
caacctaaacggcaaggtcgtaagactcctagaaacagggatgagccccctcgacgtagg
ggtagaaaaccggctgcattggcccctgtagttcctgacggtggttcagttagcaaggaa
gctaaagatttgaatgtgcatgtgcaaccagcgcaaatgggggattcaagtagtaaagac
acatgtctaaaaggtaaaactgggaccgagaatctagaatcaaccagtgttcaaaatgtc
gcaggtgtgacccaaattgtagatactgtgcattccctgggtccaaaaagaaaggagcaa
gcacccaaaactgctcaacacaaacaattgttggcatcatcaacaaaaagtgatgctact
ggaaccttggacaggaccactatatcaggccgttatcaaactgcaaacgtgaatgatgtt
gctcgagtaatgaaggaggtcttctctggaactggcttgtcaaaagcgaaagttggagag
tcttctgggaaagaaagcaaggatgcccctgcaatgcctgttttgagcaagtcgtctgtg
gaggtgatcagaaataatcagtcagaggctactttagccactgttttaaattccaacatt
ccagttggggctcatgaactagaatcttcagttagaccaggttctgcaaatgcttcagaa
gaatgcatcattccaacgatcgacgaggaaaattgtgcaagttcgaaggctaatgcagta
aatatattggttgaatcaagagaaatgtctgccgcatgctcaattgtggctagtggctct
ggaatttcatcaaatttcaacaatgctgaccataatccaccagaaggctcaactatttcc
tcaagtctggttgattgtaattcatcaaaaactcctaaggtgacggatgatgcattgaaa
agcgaaacaaaacctgttagtggggaactcttaaaatcttctcctgatagaagcagctat
gaagttccctcatctttgaataacgatggtgcaagtcaccctgctcctacattgcctgtt
gcttctgatagcagtcatacaaatatgataactgccccttgtacgaatcaggagaataat
ggctgtcaaagtctctcgggtcatcatgaaaatcttgatcattcaggtattacaagtttt
gatgagagctctgatgcactcatgtcaggtgctgaacctgatgttcaaggatgcctttct
gtggctaccatggatattgagcgtaagaataacgaagtgaatgatgtcgcccctattctt
gaacaaatggatcctgccacaaagcaggatgttgacattgtgctggggaagtctagtggc
agtgtagatcatgctgacacaggtgcatctgatatggtgaaggaagcatcgggaaataaa
ttagagcttgcttcagaagggttgccgaattttccttcatctgatgatggaaatgctaaa
gtccaagaagtttgtgctggaagtcctgacgattcaaatatagctaaatccaatagaggc
tctctggagttcgatctggtaccccctagagttgacgctgcagaatgctttatcaaaact
gatgttgaagaacagaaagcaccagagttaaataccagtagtaagtgcatcttggaggaa
aatttgaatgttccagaaaagaaagaaaaagtaatggaaaacaatgctgaatttggtgag
cctaaagatgttcccgagccaattgctccgacccaggataatgaagacaataagggtgac
aaccatgatgcatgtctcatggatgtggatgtctccaggaatgatgatttagatgaatca
gatgctggtggactaatccctgctgatacttcaccttcaacatcagtgagaccaaatgaa
tctaaaagttctgatgcaattgttcaaacggacatgtctgatggagaacatgtgccagaa
gatacaacggctaccaaggttctgccgtcatcttcacaggaaggggtagaaaattgttct
ttcacgtctgtggtagatcaagttgatagtttagggaagttggaggaacccaaaaatatt
ggagttagtgctaatcttcaagtgattgtgtctcaggatgatgtgatttcagaaaacctt
gtgcgtgaagattcaaatgatacatccattgcactacaggaagggaagattgagggatct
ggtgagataaatcgagggtctcctagtgaagaaaggcaatctgatcctcaagttgaagag
gttcttgttgatcgaatcgaagaagataaatcaggaaatttggcccaaccactttcttcg
acagaagttaaggaaataaatatgatggtgttacccacaagtttagataattcaggtgat
caaactgatttacctgaatcctcatccacgatgacagacagagaaattattgggaattct
tgcaaggatgatttgcaggagtgcacagtcacggattcaataaaaactctccaggatagt
agagaattaccaaaagagttatcacaagtttcggctgtgtttgcttcaaccaacagcaac
gaggagtcgcctcaattggatccccctcaattggatccccttagctccccagtctctctg
gagcgaccaagtgataatccaatgagtagtgaccatatggttgcaacacatgataacatt
gttttgtctgaaaatgtgtcatctgttttgttagttagtgaagaaaacaagcgtcaaagt
tcctctgagaaatccttatctgatagtgcagagccgttggaggattgcaaagattctgat
aatagcagcgacagattggtcattactcaagtcaacaaggaacagcttttaagcatctcc
gaaaacctcgtctccgtggattcttccaatcatatggaagtttccactagtgatcagatt
aatgttcctcaaactgaggagtctgttcccgtaaatccagttgataccttaaaccagccc
ctaccttctacaagtactatggaagaagataagtccgaaacctcatttgatagtggacta
attgctgtccccctgctgctgacagatgttttgcagactgaaacagaaccaatggacact
tctcaacctggtggtattttagaagatgcatcaggagaaacaattttgccttcatcttct
ttgttggaagaggtgggggagccttctctagacaaggctgtaacagccagtccatcctct
ctacctgttgaaaatgaaagtatggaacgctcaccagtttcgagcccggctgataatgcc
attgcagttgtagaaacagttgtatgtgatgaagctaatgtatccacggaaaatgaaagg
tgcccaccggcagattgtgccggagatttagaaatggccatatgcaacgaagctgatgtt
ccaccagtcagtgacacggtgcaggatccggccaatagtgtcacttcagtagaattagcc
atacgtgatgaagttgatgttcctccagtttgtgactcggcaaacgctccagctgatacc
tctacgatatgtgatcaagctgacgcagctcctccagctgatacctctaccatatgtgat
caagcggacgcagctcctccagctgatacctctaccatatgtgatcaagcagatgcagct
cctccagcttccgagttaaaacaggatccagttgatagcaccctggcatgtgatcaagcg
gatgtttctccagtttctgactcgctgccagaaaataagtctccaaatttggacctgcct
cctggatctccaccagtgaaggatgaaataactgtcgaaacccaggagcggtcaccggag
gaaactccagttgacaaaagttcagttgaatccgaaacagaggatccaaagcaaagtgaa
tga
DBGET
integrated database retrieval system
