Cucumis sativus (cucumber): 101206588
Help
Entry
101206588 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101206588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101206588
03012 Translation factors [BR:
csv03012
]
101206588
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101206588
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101206588
Translation factors [BR:
csv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101206588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
nSTAND3
AAA_22
ATPase
AAA_16
AAA_19
PhoH
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
101206588
NCBI-ProteinID:
XP_004135377
UniProt:
A0A0A0KTB9
LinkDB
All DBs
Position
5:complement(27720578..27730003)
Genome browser
AA seq
1144 aa
AA seq
DB search
MHNIKRLPNFLLVLSKNISCDLSSNHGLAVRPLKLLLQQSRSYSVSRVWRCSYHYAAEQF
SDDEYECDGDNNTASSSVANIDEWKWKLSLLSRNERDQEIVSRDNRDRRDFEQISNLAKK
MGLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHCDRIRLSS
GKGSDIPNDVKSIEEVKDVNMDECEDPYLDGSVMEKVLQRRSLRMRNMQRAWQESPEGRK
ILDFRRSLPAFKEKEKLLQAIAENQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSI
ICTQPRRISAMAVSERVSIERGESLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSD
RNLDGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAP
TIHIPGFTFPVRSYFLEDVLETTGYKLTSFNQIDDYGQEKVWKTQKQLAPRKRKNQITSL
VEDALDKSTFGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDI
SSLRDQLRAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPAQNVRKVVLATNMAEASITI
NDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVF
TAFSEYQLPELLRTPLNSLCLQIKSLQVSSVGEFLSSALQPPKPLAVQNAIDFLKMIGAF
DEKENLTNLGKFLSMLPVDPKLGKMLIMGAIFQCFDPILTIVSGLSVRDPFLLPQDKKNL
AGIAKGRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSMQTLQAIDSLRRQFT
FILKDAGIVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLL
YANSVNARYNTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVNRGVQAGHLKML
NGYVEFFMDSSLADCYLQLKEELDKLIENKLENPGLDILKEGKYLVLSVQELVSGDQCEG
RFVFGRNSKKQALSSKDRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEF
KGMQFVGKPKKNKQLAERDAAIESLAWLTQTSDNNDANSDDDSPVDVTDNMLKLLGKRRR
SKRR
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcataatatcaaacgacttccaaattttctcttagtattatcgaagaacattagctgc
gacctgtccagcaaccacggtcttgctgtgaggccacttaaactgcttctgcagcagtct
cgttcctattctgtttcacgagtctggcgatgttcgtatcactacgcggcggagcaattc
tcggacgatgagtacgagtgcgatggtgataacaatacggcctcatcctctgtggccaac
attgacgagtggaaatggaaacttagtttgctatctcgaaatgaaagggatcaagagatt
gtatccagagacaacagagacaggagagactttgagcagatctcaaaccttgccaaaaag
atggggctctactgttcaatgtatggaaaagtggtagttgcaagcaaagttccccttcct
aactaccggcctgatttggatgataaacgaccacaaagggaggttgttattcctttaagt
ttgcaaaggagggtggaaggtttactacaggaacattgtgatcgcattcggttaagttct
ggaaagggtagcgatattccaaatgatgtcaagtccattgaagaggttaaagatgtgaat
atggatgaatgtgaagatccttatcttgatgggtctgtgatggaaaaggtacttcagcgg
aggagtttgcggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaag
atactggatttcaggaggtctctgccagcattcaaagagaaggaaaaactactccaggca
atagcagaaaatcaggtagtagttatatctggagaaactggatgtggtaagactacacaa
cttcctcaatacctattagaatcagaaattgaaactggtagaggagcattctgtagcata
atatgcactcaacctcgaaggatctctgcaatggctgtttctgaaagagtatccatagag
cgaggagaatcccttggtgaaacagttggctataaagttcgattagaaggtatgaaaggg
aaaaacacccatctgttgttttgcaccagtggtatattacttcggaggcttctaagtgat
cgtaatctagatggggttacccatgtctttgtggatgaaattcacgagagaggcatgaat
gaagattttctgttgattgtcttgaaggatctccttccacgtcgccgggatttaagatta
atcttgatgagtgccactttaaatgctgaacttttttccagttattttggaggagcacca
actattcacatcccaggttttacatttccagtgaggtcatactttctggaagatgtgtta
gaaacgactggttacaagttgacatctttcaatcaaattgatgattatggccaagagaaa
gtgtggaaaactcagaaacaacttgctccacgaaaaaggaaaaatcaaatcacttctctt
gtggaggatgcgcttgataaatccacctttggaaattacagttccaacacgcgagattct
ctctcgtcctggatgcctgactgcataggttttaatcttattgaggctgttttgtgccac
atatgtcggaaggaacgacctggtgcagttttagtattcctgactggatgggaggatatt
agcagtttgagggatcaactgagagctcatccacttctaggagatccaaacagggttttg
cttttgacatgccatggttcaatggcaacatctgaacagagactcatatttgagaaacct
gctcagaatgtccgtaaagtagttcttgccactaatatggcagaggcaagcatcacgata
aatgatgttgtttttgttattgactgtggaaaagcaaaagaaaccacgtatgatgcatta
aataatacaccttgtctgttaccttcatggatatcacaggcatctgcccggcaaagaagg
ggtcgggctggccgtgttcagccaggaaaatgttatcatctttacccaaaatgtgttttt
acagcattttctgagtatcaacttcctgagcttttgagaactccattaaattccctctgc
cttcaaataaaaagtttgcaggtttcaagtgtaggagaattcttgtcatctgctctacag
ccaccaaaacccttggctgtacaaaatgccattgattttttaaagatgatcggggcattt
gatgagaaggagaacttgacaaaccttggaaaatttttgtcaatgcttcccgttgaccct
aagctaggaaaaatgctgattatgggtgctatcttccaatgctttgatcctatccttact
atagtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaagaactta
gccgggatagcgaagggtagattttctgcgaaggactacagtgatcatatggcgcttgtt
cgtgcttatgagggatggaaagatgcagaaagagaagggtcttcctatgagtactgctgg
aggaacttcctttctatgcaaacacttcaagcaatcgattcacttagaaggcagtttacc
ttcattttaaaggatgcaggaatagttgatttagatggtagcacaagtaataagttaagc
cacaaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatct
gttgtgcacagagagacatccatgtccttcaaaaccatggatgatggccaggtcctgctg
tatgcgaattctgtaaatgctcgttacaatacaattccctttccatggctggtctttggc
gagaaagtgaaggtcaatacagttttcttacgcgattctactggcatatctgattcgatg
ctgattctttttggtggagcagtaaatcgtggtgtacaggctggtcatttgaaaatgtta
aatggctacgttgaattttttatggattctagtttggcggactgctatttgcaactcaag
gaagaacttgataagcttattgaaaacaaacttgagaaccccggacttgatattctcaag
gaaggtaagtaccttgttctttctgttcaagagttggtgtcgggcgaccaatgcgaaggg
agatttgtctttggtagaaacagtaagaagcaagcattgtctagcaaagacagattcaca
aaggatggtaccaacccaaagagcttgcttcagaccttgctaatgagggcaggacattcc
cctccaaagtacaaaaccaagcacctcaagacaaacgagtttagggcattagtagagttt
aagggtatgcaattcgttggtaagcctaagaaaaacaagcagcttgccgagagggatgct
gctatagagtctctggcctggttgacacaaacctctgacaacaatgatgcgaattcagac
gatgactctcctgttgatgtaaccgacaacatgctaaaacttcttggaaaacgaaggcgg
tctaaacgtcgttga
DBGET
integrated database retrieval system
