KEGG   Cucumis sativus (cucumber): 101207521
Entry
101207521         CDS       T02486                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101207521
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csv03041]
    101207521
Spliceosome [BR:csv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    101207521
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_TEP1_C PRP4 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Nup120_160 WD40_like
Other DBs
NCBI-GeneID: 101207521
NCBI-ProteinID: XP_004146749
UniProt: A0A0A0KHD8
LinkDB
Position
6:20116286..20121592
AA seq 569 aa
MEIDDQNPASTAAESPETLPGGENEELDNPAEPTQPAATSVIPPSIVPAIAPIPPPIIRP
LAPLPSRPPLFRPPVTQNGELRTSDSDSEHDELAPSRTAPGSTAEYEISEESRQARERHE
KAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRSIMARLDAEG
QLEKLMKVHEEEEAAATGGTEEAEEEVLQYPFYTEGSKALLDARIDIAKYSILRASSRLE
RAKRKRDDPDEDVEAEMDWALRQAESLVLDCSEIGDDRPLSGCSFSSDGKFLATSSLSGV
AKLWSMPQVRKVSNFKGHTERVTDVMFSPVNECLATASADRTARLWSAEGSLLKTFEGHL
DRLARIAFHPSGKYLGTTSFDKTWRLWDVETGVELLLQEGHSRSVYGIAFHHDGSLVSSC
GLDALARVWDLRTGRSVLALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLY
IIPAHSNLVSQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIISD
GQCIATVSHDRTIKLWSVNSKDIQTMDVD
NT seq 1710 nt   +upstreamnt  +downstreamnt
atggaaattgatgatcaaaaccctgcatcaactgctgcggaatctcctgaaacccttcct
ggtggtgaaaatgaggaacttgataatccagccgaaccaactcaacctgcagctacatca
gttattccaccttcaattgtccctgccattgctcctatcccccctccaattatccgtcca
ttggctcctcttccgagccgacctcccctctttaggccccctgtaacacaaaatggtgag
ctgagaacaagtgactcagactcggaacatgatgaattggctccttcccgaacagctcca
ggttcaactgcagagtatgaaatctcagaagagagcaggcaagctagggagcgtcatgaa
aaagccatgcaggaatttttgatgaagcgtcgtgcttctgctctagcagtgcctactaat
gacatggctgttcgagctcgtcttcgacgtcttggtgagcccataactctttttggagaa
agagaaatggaaagacgggacaggttgcggtcgataatggcacgattggatgctgaaggg
cagttagagaagctcatgaaagttcacgaggaagaggaggctgcagctactggtggaact
gaggaggctgaggaggaagtgcttcagtatcccttttatactgaggggtccaaagctctc
ttggatgcaagaattgatattgcaaagtattccatcctaagagcatcttcacgcctggag
cgtgcaaagaggaaacgggatgacccagatgaagatgtggaagcggaaatggattgggct
ctgagacaggctgaaagtttggtcctggactgtagtgagataggagatgatcgaccactt
tctggttgttctttctcgtctgatggaaaatttcttgccactagttcattgagtggagtt
gcaaaattgtggagcatgcctcaagtaaggaaggtttccaactttaagggacacacagag
cgtgttactgatgtaatgttttctccagtgaacgagtgtttagcaactgcctctgctgac
cgaactgcaaggttgtggtctgctgaaggatctctacttaaaacatttgagggccatcta
gaccgccttgcacgaattgccttccacccgtcgggcaagtacttgggcacaactagcttt
gacaagacctggagattatgggatgttgaaactggtgtagaattacttcttcaagaaggt
cacagtagaagtgtctatgggatagccttccaccatgatggatccttggtatcatcttgt
ggacttgatgcgcttgctcgcgtttgggatcttcgaactggtagaagtgttcttgccttg
gaaggccacgtcaagccagtccttggagttagtttttcacccaacggttatcatttagct
actggtggagaagataacacttgtcgaatatgggatttaaggaagaaaaaatctctttac
ataatacctgcacattcaaacttagtttcacaggtgaaatatgaacctcaggagggatat
ttcttggttactgcatcatttgatatgacagcaaagatttggtctgctcgagattttaag
cctgtgaagacactctctggtcacgaagcaaaagttacatctttggatataatttcagac
ggacagtgtattgcaaccgtctcacatgatcggaccataaagctctggtctgttaatagt
aaagacattcagactatggacgttgattga

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