Cucumis sativus (cucumber): 101208309
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Entry
101208309 CDS
T02486
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csv03009
]
101208309
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101208309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
DUF7194
RYDR_ITPR
Motif
Other DBs
NCBI-GeneID:
101208309
NCBI-ProteinID:
XP_011649103
UniProt:
A0A0A0LIC2
LinkDB
All DBs
Position
2:9136206..9159958
Genome browser
AA seq
2678 aa
AA seq
DB search
MATASHAQAVKSLNKSPGRRRFVFQTFSQRVQEIDIDVYRSLDKVKSEPSEGSSFFRDCL
IEWRELNTAEDFISCYEEIIPLVQTLPLVILHKESIFSNLLSRVQIKARLSLEPILRLIA
ALARDLLEDFLPFLSQLTDALVSLLEGGAAREPEIIEPIFTSWSYIMMYLQKYLTRNITD
LLRVTVSLRYYSKDYIQDFMAEATSFLLRNAPVDQLKNGIKRIILEVVKKPLATREYGTS
ALLFHTMRGTSSRFHSRAELVFRFLISGPIFEIGRDSSQGSDAILEVLKCVCQRLCEEMD
PQELEVIWKCLFEEITVAISNDYMVHINHLLMLLASAAQNVNWKKLHDYKPMLELVDLLV
MKFATTPSLTVDDDLSSLVDTILQLMLVILEGLQNSEDFLCISGCSLRWAPIFQLNNSSL
LTFVREVMEKDTSVLCAFRTNILRVMNESLESSPEEVIYLLLSFSERLPTEVLGTSEEEI
PKINNFILKILRQWIKEITDFVQHSSSTIDINESKLATFWGVVRCCPYILKFQASSSLLV
ELIDALDRLCTLEGDIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYS
SCSQVLVAVADYLDFIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLS
TLRILCHYEPLQSATLTKESSIDNEMEAENLEPYSDDLVGSEVLRLLLSVESTSTSISTS
RKIILFISGVQRALMAEGIPEAYLLVALNGIIGIFQNRFSYIWDQASECLASLIRNHSEF
VWDKLICYFQQWLCLLDQPGRDTAESSDELNDLVRCFRSFVVPSTDSTPLFTLLSLVLQS
LQKNSTIVESQSQRMLPLFLTFLGYSTGHVDSVDSFKQYACKSKEWKCVLKEWLNLLRKT
RNLKSFHKSDFLKEVLEQRLLDDNDAEIQSKVLDCLLMWKDDFLISHEQHLKNIISPKTL
REELTRWSLSKEKNQIDERHRPKLVPLVTRLLMPKVRKLKVLGSRKQASVNLRKAVLQFI
AQLDTVELPLFFSLLLKPLNIIPREADATANWFSNLHLVSMKASATNILKYFSTESIVAL
SWKKKYGFMHVIEEVLAVFDEMLISPFLNIILGCVVRILASCTSSLHAARHNEMSLSEIG
KTCNKNSLEMNKEAAFPGLTYTAVKQHKDLRSLCLRVISVVLYKYEDFDFEMEFWDLFFT
SVKSSIESFKHEGSSSEKPSSLCSCFLAMSRSHKLVPLLARERNLVPDIFFILTISAASQ
PIILFVLQFIENLLSFDGELDGNDSAVRSILHPNLDSLVQSLHVLFQSGDAKKRKLIEHL
NGPMIRIFKLLSKVVRDQLHAKKFVEIILPCLSQTGRSSEFYANTLQVVQNVVPILRSES
TTKILKAVSPLLISVEQDLRLLVCDLINALAEVDSSILCVAQIIRGLNATSAMEIGGLDF
DTIVNTYEKISVDFFCATSEEHALVVLSQCMHDMSSEELILRHSAYRCLLSFVEFSSSVL
GQGGISHQESSDNITLYDNSWSKESIMRLTNKFIFKHMGEAMNRETSVKKEWINLLREMV
LKFPDVANLSSLKALYSKDAEIDFFSNITHLQKLRRAKALIRFKNTIPTVNMPEVITKNV
FVPLFFNMLFDLQEGKAENIRVACIEALASISGQMEWKSYFALLRRCLRDLTKHPDKKKV
LMRLICCILDNFHFQENISDVGSTQLYGSVVVMNNMQVCLSKDVFPKIQKFMNSQSERVD
IYVHLAALKVLKLLPANVMDSQLLSIIQHIVNFLKNRLESVRDEARSALAACLKELGSEY
LQVVVRVLRGSLKRGYEMHVLGYTLNFLLSKLFTGPATGKIDYLLDDLISVAEKDILGEV
AEEKEVEKLASKMKETRKQKSFDTLKLVAQSITFKSHALKLLRPVTDHMKKHLTPKAKTK
LENMLSSVAAGFESNPSVNQTDLLVFNYGLIKDGIKVENGQGGISSLVDANKHSRDVSRG
KNFSCQTILAKAPCSHLIMVFALKLLHGYMKKMQLGKGDAQLLAMLDPFVLLLGDCLTSK
YEDVLSLTLRCLTLLLRLPLPSVKSQADKIKGVVLLIAQSSVDPRNPLVESCLRLLTVLL
RNEKVTLSTDQLHLLIQFPLFVDIDKNPSFVALSLLKAIVSRKLVVPEIYDLAIRVAELM
VTSQVEPIRKKCGKILLQFLLDYHLSEKRLQQHLDFLLSNLRYEHSTGREAVLEMLHATV
VKFSKSVVDSISETLFFHLVACLANDQDHHVRSMAGLVIKSLIDRISPGPQHNILESSLS
WYSEGKQQLWSVAAQVLGLLVEVEALKEAFERRIQTVLLVARGILQSVVDVSMSEQIDMY
AESTITFWKEAYYSLVMLEKLMHQFPQLFFENDFQDIWEMISHLLLYPHMWIRSISNRLI
ASYFRKIVIENSGRTSERSLGAYSLMKPSRLFFIATSFCCQLKSQLTDKDADLIEQNLVF
AIRGLHSVIGEVENVDSYPFWSTLEESEQRLFLKAFQLLDSEKGKSMLLPHMTGVFNQND
AGPEQIRRLLISNLIKQMGKVALQTDTIQMTVVFNVFRNISSQISIEDCERYVFEILLPL
YRVREGFSGKVIPESMIQLAQEVCDKIQNCLGIQKFVQVYSQIMKSLKTKRDKRKQEEKR
MAVINPMRNAKRKLRIAEKQRSSKRRKITTMRMSRRML
NT seq
8037 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcttctcacgcacaagctgtcaagtctctcaacaagtcccctggtcgccga
cgttttgttttccagacattctcccaaagagtacaagaaattgacattgatgtatacaga
agccttgataaagttaagtctgagccgtccgagggatcctccttttttcgggactgcctt
atagaatggagggaattaaatactgctgaggattttatttcttgttacgaggaaattatt
ccattggtacaaacattaccactggtgatactgcacaaggagtctatattctcaaatctt
ctttctagagtacagataaaagcaaggctatcccttgagcctatattgaggttgattgcg
gcattagcaagagatctgttggaggactttttgccattcctgtctcaattaactgatgca
ttggtgtctcttctagaaggtggtgcagctagggagccagaaattattgagccgattttt
acatcatggtcatatataatgatgtacttgcaaaaatatcttacacgaaatattactgat
ttgctaagggttacagtgtccttgagatattactctaaagattacattcaagatttcatg
gctgaggcgacatcattcttgctaaggaatgcaccagttgatcagctaaaaaatggaatt
aaacggataatattggaagttgttaaaaaacctcttgctacaagagaatatggcactagt
gctctgctatttcacaccatgagaggaacctcatcaaggtttcattcaagagcagagctg
gtgtttcgctttttgattagtggtccaatatttgaaattggccgagactccagccaaggt
tcagatgccattttagaagtgttaaagtgtgtgtgtcagagattatgtgaagaaatggat
ccccaggaattggaggtgatatggaaatgcttgtttgaggaaataacagttgccatttct
aatgattacatggttcatataaatcacctgttgatgcttcttgcttcagcagctcagaat
gtgaattggaaaaaacttcacgattataaaccaatgctcgaacttgtagacttacttgtg
atgaaatttgccacaactccaagccttacagtggatgatgatttatccagccttgttgat
acaattttgcaattaatgttagttattcttgaaggtcttcaaaattctgaggactttcta
tgtatttctggttgctcattgcgttgggctccaatatttcaattaaacaacagtagttta
ttaacttttgtacgagaagtaatggagaaggacactagtgtactatgtgcattcagaact
aacattttaagagtgatgaatgaatcgttagaatcttcacccgaagaagttatttatctg
ctgctttcctttagtgagagattaccaacagaagtgttaggtacatcagaagaggaaatt
ccaaagattaataattttatcctaaaaatccttcgccagtggataaaagagatcactgat
tttgtgcaacacagttcgtcaactattgatattaatgaatctaaattggctactttttgg
ggtgttgttcgttgttgcccatatattctaaaattccaagctagttcatccttactagtg
gagttgattgatgcacttgaccggctttgtactcttgaaggtgacatctttggaatccct
aaagaaaagttggaaagcataattggtgccaccataggttcttaccttaagttgctctct
agtgagaaggctgggcttgaagaattaagcagacttgtgtaccttgccaaaagatatagc
tcatgttcacaagtcttggtagctgtagctgattatttggattttatttatgggcctgca
ttggaagctgacatcagtaaaagaatctattctgaagagtttcaagcagacaaggttgag
gatgcagtacaggtgtttgcagataatttgcgtcactcagataagggggttcgtttatct
actctcagaatattgtgtcactatgagcctttgcagtctgctactcttacaaaggaatct
tccattgataatgagatggaagctgaaaatttggaaccatattctgatgatttagtaggc
agtgaggtccttcgtctacttctctctgttgaatcaacatctacttcaatatctaccagc
cgaaagattatattatttatctctggagtgcagagggccttgatggctgaaggaatacct
gaggcttacttattggttgctttaaatgggattattggcattttccaaaaccgctttagc
tatatttgggatcaagcatctgaatgtcttgcctctttaatcagaaatcactcggaattt
gtgtgggataaactgatctgttattttcagcagtggttatgtctacttgatcaaccgggc
agagatactgctgaatcatctgatgaattaaatgatctagtcagatgtttccgctcattc
gttgttccttcaacagacagtacaccactctttactctgttatccttagtgcttcaatca
ttacaaaaaaattcgaccatcgttgaatctcagtctcaacggatgttgcctctgttctta
acatttttaggctacagcactggtcatgtggatagtgtggattcgttcaaacaatatgca
tgcaaaagcaaagagtggaaatgtgttctgaaggagtggttaaacttgctgaggaaaacc
cggaacctgaagtcttttcacaagagtgactttcttaaggaagttctggagcaaaggctt
ttggatgataatgatgctgaaatacaaagcaaggtccttgattgcctcttaatgtggaaa
gatgatttcttgatctcacatgaacaacatctaaaaaacatcatctcccccaagactttg
agagaagaacttacaaggtggagcttgtcaaaagaaaagaatcaaattgatgaaagacac
agacctaagcttgtacctttagttactcgcttattgatgccaaaagttagaaaattgaag
gttcttggttcccgcaagcaagcaagtgtaaatcttcgaaaagccgtcctccagttcatt
gcacaacttgatacagttgagcttccacttttcttttccctgttattgaagcctttgaac
attattccaagggaagctgatgcaactgctaactggttttctaacttacacctagtttca
atgaaagcgtcagcaactaacatcttgaagtacttctcaacagaaagtatagttgcattg
tcatggaagaagaaatatggttttatgcatgttattgaagaagttcttgctgtttttgat
gaaatgcttattagtccatttctcaatataatattgggttgtgttgtccgaattttggca
agttgcacatcaagtcttcatgcggcaaggcataatgaaatgtctttatctgaaattgga
aagacatgcaacaagaattcacttgaaatgaataaagaagcagcattccctggcctgacc
tatacagctgtgaagcagcacaaagatttaaggtctttatgtctcagagtcatttcagtc
gttctttacaagtatgaggattttgattttgaaatggaattctgggacctattttttacg
tctgtgaaatcttcaatcgaaagtttcaagcatgagggctcaagcagtgaaaagccaagt
tcactttgctcttgctttcttgccatgagtagaagccacaaacttgtgccactgttggct
agagagagaaatctagttcctgatatctttttcatcctcactatctcggcagcatctcaa
cccattatattgtttgtacttcagtttattgaaaacttgttgagttttgatggtgagttg
gatggcaatgatagtgccgtgagaagcattttacatccaaatcttgattcccttgttcaa
agcttgcatgttcttttccaaagtggtgatgcgaaaaagaggaaattgatagaacacctc
aatggaccaatgataagaattttcaaattactctcgaaggttgtaagggaccaattgcat
gctaagaagtttgtagaaatcatactcccatgcttatctcagactggtcgtagttctgaa
ttttatgctaatactctacaagtggtacaaaatgtggttcccattctaaggagcgagagt
acaacaaaaatcttgaaagcagtttctccgttactgatttctgttgagcaagatctgcgt
ttgcttgtatgtgatcttatcaatgctcttgcagaagttgattcttccatcctctgtgtg
gctcaaatcatccgtggtttaaatgcaacctctgctatggaaattggaggacttgatttt
gatacaattgttaatacttacgaaaaaattagtgttgattttttctgtgctacctcagaa
gaacatgcattagttgttctatcgcagtgcatgcatgatatgtcatcagaggaactaatc
ctaagacatagtgcttataggtgtttgctctcttttgtcgaattttcttcttcagttctt
ggtcaaggagggatcagtcaccaagaatcaagtgacaatatcacattgtacgataatagt
tggtcaaaagaaagcatcatgcggctaacaaacaaatttatttttaagcacatgggggaa
gcaatgaacagggagacctcagttaaaaaggagtggataaatttattgcgagaaatggtg
ttgaaatttcctgatgtagccaacttaagttcgctgaaggcattatacagtaaagatgct
gaaattgattttttcagtaacattacccacttgcagaaacttagaagagcaaaggcatta
attcgcttcaaaaatacaattcctactgtcaacatgcccgaggttataacaaagaatgtc
tttgtgccactgttcttcaatatgctgtttgatttacaagagggtaaagcagagaatatt
agagttgcttgcatagaagcgcttgcttcaatttctggtcaaatggaatggaagtcatat
tttgctctattaagaagatgcttacgggaccttactaaacatcctgataaaaaaaaggtt
ctgatgcggttgatatgctgtattttggacaacttccattttcaagagaatatttcagac
gttgggtcaacacaattatatggcagtgtggttgtgatgaacaatatgcaagtatgcctt
agtaaagatgtgttcccaaagatacaaaaatttatgaactctcagtcggaaagagttgat
atttatgtccatcttgctgcgctaaaggtgttgaaattacttcctgcaaatgttatggat
tcacaacttttgagcatcatccagcatattgtgaactttttgaagaaccgcttagaaagt
gtacgtgatgaagctagatctgcactggctgcttgtttgaaggaacttggatctgaatac
ttgcaggttgtagttagggttctgagaggatccttaaaacgtggttacgagatgcatgtg
ctagggtatacactcaattttttattgtctaagctctttaccggcccagccactgggaag
atagattatcttttggatgatctcatttctgtagcagagaaagacatccttggagaggtt
gctgaagaaaaagaggttgaaaagttggcctcgaaaatgaaagagacaaggaaacagaag
tcctttgacaccctgaaattggtagctcaaagcataacatttaaaagccacgcacttaag
ctccttagacctgttactgatcatatgaagaagcatctgaccccaaaagctaaaaccaaa
ttggaaaatatgctatctagtgtagctgctggttttgaaagtaatccttccgtcaatcaa
actgacctcttagtcttcaactatggcctcattaaagatggaataaaagttgaaaatgga
cagggtggaatctcatcgttggttgatgcaaacaaacattcaagagatgtctctagagga
aagaacttttcgtgtcagacaatacttgctaaggcaccatgttcacaccttattatggtg
tttgcacttaagcttctgcatgggtacatgaaaaagatgcaacttgggaaaggtgatgct
cagttgctagcaatgctcgacccttttgttctcttattaggagactgcttgacttctaaa
tatgaggatgttttatcattaactcttagatgtctcactctattgctaagattgcctttg
ccatctgtcaaatcccaagctgacaaaatcaagggagtagtgttgcttattgctcagagt
tcagtagacccacgcaatccgttagtggaatcgtgtttgagattgttaactgtgcttctg
cgaaatgagaaagttacactctccacagatcagctacacttattaattcagtttccgctg
tttgttgatattgacaaaaatccatcttttgttgccctttcacttttgaaggcaattgta
agtcggaagcttgttgtccctgagatatatgatcttgctattcgggtagcagaattgatg
gtgacaagtcaagtcgaaccaattcggaagaaatgtggcaaaatcttactacaatttctg
cttgattatcatctttcagaaaagcggttgcagcaacatttagattttttgctctcaaat
ttaaggtatgagcattcaacaggaagagaagctgttttggagatgcttcacgcaactgta
gttaaattttcaaaaagtgtggtggatagtatttctgagacattattttttcatttggtg
gcttgcttggctaatgatcaggatcatcatgttcggtctatggctggtctcgtaataaag
agcctgatagatcgcataagcccaggtcctcaacataatatacttgagtccagtctatct
tggtactcggaaggaaagcagcaattgtggagtgttgcagcacaggtgttgggattacta
gttgaagttgaagctttaaaggaagcttttgaaagacgtatccaaactgtgttgctggtt
gccaggggaattttgcagtctgttgttgatgtttccatgagtgagcaaatagacatgtac
gcagagagtaccattaccttttggaaggaggcatattattcgttagtgatgctagagaag
ttgatgcaccaattccctcagttattctttgagaatgattttcaagatatatgggaaatg
attagtcacctgcttctttatccacacatgtggatacgtagcatctcaaatcgcctgata
gcatcgtacttcaggaagattgtgattgagaatagcggaaggacttcagaaagatcgctt
ggagcctattctcttatgaagccaagtagactcttctttattgctacctccttttgctgc
cagttgaagtcacaacttacggataaagatgctgatttgatcgaacaaaaccttgttttt
gctattcgtggtttgcattctgtcatcggagaagtggagaatgttgactcgtatccattc
tggtctacactggaagaatccgagcaacgactttttctcaaagcattccagttgcttgac
tctgaaaaaggaaaaagcatgcttttacctcatatgactggggtatttaaccaaaatgat
gctggtcctgagcagatccgtcgccttctcatctcaaacttgatcaaacagatggggaag
gttgctcttcaaacggatactatacagatgacagttgttttcaatgtctttcgcaatata
tcatcacaaatcagcatagaagattgtgaacgatatgtttttgaaatcttgttgccttta
tatagagtccgtgaaggattttctggaaaagtgatcccagaatcaatgatacagttggcc
caagaagtgtgtgataaaatacagaattgtttggggattcagaaatttgtacaggtgtac
agccagatcatgaagagtctgaagaccaaaagggacaagaggaagcaagaagagaagcgg
atggctgtcattaatcctatgcgaaatgcgaaaaggaaacttcgtattgcggaaaagcaa
cgctccagtaagagaaggaagataacaacaatgagaatgtcaagaagaatgttgtag
DBGET
integrated database retrieval system
