Cucumis sativus (cucumber): 101208686
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Entry
101208686 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101208686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101208686
03012 Translation factors [BR:
csv03012
]
101208686
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101208686
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101208686
Translation factors [BR:
csv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101208686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
BEX
AAA_19
ATPase
DUF5128
Motif
Other DBs
NCBI-GeneID:
101208686
NCBI-ProteinID:
XP_004136518
LinkDB
All DBs
Position
3:complement(31324626..31335976)
Genome browser
AA seq
1034 aa
AA seq
DB search
MSLRTFAFNHSLLCKYPFLPPRLSVLRPVFSTFAMSYRPNYQGGRRGSSSGGGRGGGRRS
GAGGGGGRGGGGGRGEQRWWDPVWRAERLRQKAAEMEVLNEDEWWTKMDQMKRGGEQEMI
IKRSYSRSDQEILSDMAHQQGLYFHVYNKGKTLVVSKVPLPDYRADLDERHGSTQKEIRM
TTDIERRVGNLLDDSQGKGRELRVSSTASVEEGKQFPTSVNNIKPTSKLESDSAKEKLSS
ELKQKQEAMKGSDGLKAMLAFREQLPAFSVKSEFIKAMTENQVLVVSGETGCGKTTQLPQ
FILEEEISKLRGADCRIICTQPRRISAISVAARISSERGENLGETVGYQIRLEAKQSAQT
RLLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRNLLPQRPDLRLILM
SATINADLFSKYFGNAPTLHIPGKTFAVSEFFLEDVLEKTRYNIKSEFENFEGNSRRRRR
QQESKKDPLSELFEDVDIDSQYRGYSSSTRKSLEAWSGTQLDLSLVESTVEYICRRESNG
AILVFLTGWDDISKLLDKVKANNYLGDSGKFLVLPLHGSMPTINQREIFDSPPPGKRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAQALQPPDSLAVQ
NAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAAMAHR
DPFILPINRKEEANDAKKSFAGDSCSDHVALLKAFEGWKDAKRNGAERSFCWDNFLSPVT
LQMMDDMRMQFLDLLSDIGFVNKSRGPSAYNQYSQDLEMVCAVLCAGLYPNVVQCKRRGK
RTAFYTKEVGKVDIHPGSVNAGVHIFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGG
NLVPTNTGDGIEMLGGYLHFSASKNILDLIKKLRGELDKLLNRKIEEPGFDINTEGKGVV
AAAVELLHSQVVRH
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccggaccttcgcatttaaccactctctgctttgcaagtacccatttcttccg
cctcgactctctgtacttcggccagttttttcaacattcgcaatgtcatatcggccgaac
tatcaaggtggccgtcgtgggagttcctctggaggaggacgcggcggtggtcgacgaagc
ggagctggaggtggcggcggtcgagggggcggcggcggcagaggagagcaacgttggtgg
gacccggtctggcgtgctgagcgtctgcgacaaaaggctgccgagatggaggttcttaat
gaagacgaatggtggacaaagatggaccagatgaagagaggaggggaacaggagatgata
attaagcgtagttatagtcgaagtgaccaagaaatcctttctgatatggctcatcaacag
ggtctttacttccatgtgtataataaggggaagacccttgtggttagtaaagttccattg
ccagattaccgggctgatcttgatgaacgccatggatctactcaaaaagagattcgaatg
actactgatatagagaggagagttggaaatcttttggatgattcacagggtaagggaagg
gagctcagggtttcttctactgcatcagttgaagaaggcaaacagtttccaacttctgta
aataacataaaacctaccagcaagttggagagtgattcagcgaaggagaaacttagttct
gaacttaagcagaaacaggaagcgatgaaaggaagcgatggcttaaaagcaatgttggca
tttagagaacagcttcctgcattcagtgtaaaatctgaatttataaaagcaatgacagaa
aaccaggtattggttgtttcaggagagacaggttgtggtaaaaccacacagctccctcaa
tttattttagaagaggagatatcaaaacttcgtggtgctgactgccgaataatatgcacc
caacctcggcgtatctctgctatttcagttgctgctcgtatatcctctgaaaggggagaa
aatcttggtgaaacagtcggttatcaaatacgattggaagcaaaacaatcagctcagact
cgactactattttgcaccactggagttctactccggcagttggttcaggacccacaattg
actggtgttagccatttgcttgtggatgaaatacatgaaagaggcatgaatgaagacttt
ttattaataattttgcggaaccttcttcctcagcggccagatttacgtcttattttaatg
agtgccaccatcaatgcagacttgttctccaaatactttggaaatgccccgacgctacac
ataccaggaaaaacatttgctgtgtcagagttctttctagaggatgtgctagagaaaact
cgttataatatcaagtcagagtttgaaaactttgaaggaaattcaaggagaagaaggaga
caacaagaatctaagaaggaccctttatcagaattatttgaggatgttgatattgattct
cagtacagaggttatagttcatctacgagaaagtcacttgaagcctggtctggaacacaa
cttgatttgagtctggtggaatcaactgttgagtatatttgtcgccgtgaaagcaatggt
gctatccttgtattcctaaccggctgggatgacatttctaaactactcgacaaagtcaaa
gcaaacaattatcttggggattctgggaagttcttagtccttcctttacacggttccatg
ccaaccattaatcagcgggaaatatttgatagtcctccccctggcaaacgaaaaattgtg
ctggcaactaatattgctgagagtagtatcaccatagatgacgttgtctatgtcattgat
tgtggaaaagcaaaggagacgagttatgatgctttaaacaaacttgcttgtctgctgcct
tcatggatttccaaagcttcagcacaccagaggcgaggtcgtgctggtcgtgtgcaacct
ggtgtttgttatagactctatccaaaaattatccacgatgcaatgcttcagtatcagtta
cctgaaattttgagaactcctctacaagagctttgtttgcatatcaaaagcttgcagcta
ggaactgttggttcctttttggcacaggcattacaaccaccagattcgcttgcagtccaa
aacgccattgaacttctcaaaacaattggtgctttagatgatatggaggaacttacacca
ctgggtcgtcatctttgcaccctacctctggacccaaatatagggaagatgcttctcatg
ggttctatatttcaatgcctgaatcctgccttgaccattgctgctgcaatggctcaccgc
gatccatttattctgcccattaataggaaagaggaagcaaatgatgcaaagaaatcattt
gctggtgactcttgcagtgaccacgttgctcttcttaaagcctttgaaggatggaaggat
gcaaaaagaaatggagcagaaagatcgttctgttgggataactttttatctccagtaacc
ttgcagatgatggatgacatgagaatgcagtttctagatctattatctgatatcggcttt
gtgaacaagtccaggggtccaagtgcatacaaccagtacagtcaagatttggagatggtg
tgtgcggtgctttgtgctggactatatcctaatgtcgtacaatgtaaaagaagaggaaag
aggactgccttctatactaaggaagttgggaaagtggatattcatcccggatctgtgaat
gcaggggttcatatcttccctctgccttacatggtttacagtgagaaggtcaaaacgact
agtatatacattagagactctaccaatatatcggactatgccttgttgttgttcggtggt
aatcttgtacctaccaacactggagatggcattgaaatgctcggtggctaccttcatttc
tctgcatcaaagaacattttagatttaataaagaaattgcgcggtgaactagacaagctt
ttgaatagaaagattgaggagccgggtttcgacattaatacagaaggaaaaggagtggtg
gcagctgcagttgagttactgcacagtcaagttgtacgtcactga
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