Cucumis sativus (cucumber): 101208698
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Entry
101208698 CDS
T02486
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csv03036
]
101208698
Chromosome and associated proteins [BR:
csv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101208698
microRNA pathway
RISC loading complex
101208698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
Dicer_dimer
DEAD
PAZ
ResIII
dsrm
Cas3-like_C_2
SWI2_SNF2
SNF2-rel_dom
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
101208698
NCBI-ProteinID:
XP_004139098
UniProt:
A0A0A0LY14
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All DBs
Position
1:29750382..29774895
Genome browser
AA seq
1393 aa
AA seq
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MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ
LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV
LVMTPAILLNGLRHSFFRLSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR
IFGMTASPIKSKGGNSELNYWQYIQELESLLNSKVYTVSSESELANFVPISTPKFKFYIR
KDIPYALYEQLANALKVLKSKHEQSLENSDLNPSNVEPTRKRISKAFLALMYCLDELGLW
LTWKAAESLSWMEDDFSPWETLDIFGEAIVKSFCSDALKLLANPVKSGCSYGSIGDNLEA
DMAAGLMTPKVVCLIASLLEYRSIEDIRCIVFVERIVSAVALQTLLSLLLPKYTCWKTKY
IAGSTSGLQTQSKKKQNEIVEEFRCGKVNIIVATSILEEGLDVQSCNLVIRFDPSSTVCS
FIQSRGRARMKNSDYILMVKSGDSTTLSRLQRYLASGEIMRNESLCHASLPCVPFRSDYD
EESYYVESTGAVVTLSSSVGLIYFYCSRLPSDCYFKPTPRWDKETCTLHLPKSSPLQTFS
SKDDAKYSKQRACLEACKQLHKCGALTDNLVPQIVAEESVAQEIGNKPLDDEQPIYVPPE
FVHCCPHNSSVVYHCYLIELKQNFHYDISAHNIVLAMRTELEFEVQSMCHDLDVDRGSFD
VNFKYVGIIKLSPEQVLLSRQFQRTIFKVLLNHTWTNKLSENNEICLGDGPRVDYLLLPS
TGGELISWEIVLSVLVSSQEYCVHRGISSSKDVSYDVPTKSGLVCICRLQNSVVYTPHNG
HVYCITSVLSELNGNSLLKIRKNEMMAYKEYYKVRHGIDLRFEKQPLLRGKKIFPVHNYI
KRFRKHKEQGESRNSLVELPPELCSIIMSPISVNTLYSYSFLPFIMHRLESMLIASNLKK
LNSDHCMQNDIPTTKVLEAITTKKCQEKFNLESLETLGDSFLKYATGQHLFRTFQNDHEG
LLTLKKDRIVSNAALRRRGCEHKISGFIRDEAFDPQNWDIPGDTHEVYQLREEVLFSGRK
VYVQRKRKIKSKRIADVVEALIGAYLSTGGEKAAMQFLNRIGIEVNFDFVPYERPFRVDV
HKLINVGHLESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRLEFLGDSVLDYAITVHL
YNKYPGMTPELLTDMRSASVSNDCYSRTALKAQLHKSILHCSHDLHKHISSAVQNFETLS
SEATYGWESEISFPKVLGDVIESLAGAIYVDSGYDKEIVFRSIRPLLEPLVSPETLKKHP
RRELNELCQKENYKLKKTVTSRVNGRSYVTVEVEVNGRIFKHTEISLDRETGEKVASKEV
LKSLKEAYPMLHK
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaatatggaaaccgagaatgaacagctagtggctgatcctttgtcatttgcc
agaagttaccagttggaaggattggaaaaagcacttaaacagaacaccgtagtgttttta
gaaactggctctgggaaaactttgattgccatcatgcttttgcgcagctttgctcatcaa
ctacgcaaaccttcacccttcgttgctgttttcttagttccacaagtcgttttggttact
caacaagctgaagctttgaagatgcatactgacttgagcgttggtttgtattacggagat
atgggggtagacttttgggatggtgcaatttggaagcgagaaatagaaaaacatgaggtg
cttgtgatgactcctgcaattttgctaaatggcttgaggcatagcttctttcgtctaagc
atgataaaggtcttaatattggatgaatgccatcatgctagaggaaaacacccctatgct
tgtattatgacggagttctatcaccaacagttatctcttggtaaatctgatcttcctaga
atatttggaatgactgcttctcctataaagtcaaagggtggcaattcggaattgaattat
tggcaatatatacaagaacttgagtccttgttgaattcaaaggtgtatactgtttctagt
gaatctgagctggctaattttgtgcccatttcaactccaaagttcaaattctatattcgc
aaggacattccatatgcattatatgagcaattagcaaatgcattgaaggttttgaaatca
aagcatgaacaatccctggagaattcagatctcaatccttcaaatgtagaaccaactagg
aaacggatatcaaaagcttttttggctttgatgtattgtttagatgaactgggtctttgg
ttaacctggaaggctgctgagtctttatcatggatggaagatgatttttctccatgggaa
acactggatatttttggtgaggcaatagtgaaaagtttctgttccgatgccttgaagcta
cttgctaaccctgtaaaatcaggatgttcctatgggtctattggtgacaatcttgaggct
gatatggctgcaggtcttatgactccaaaagttgtctgtctcattgcatccctgcttgaa
tacaggtctattgaggatattagatgtatagtatttgtcgaaagaattgtttctgctgtg
gctcttcaaactctactgagcttattgctcccaaaatacacttgctggaagaccaaatat
atagctggatcgacctctggtttgcaaacccagtcaaagaagaaacaaaatgaaattgtg
gaagagtttcgttgtggcaaggtcaacatcattgttgcaacctcaattcttgaagagggt
ttggatgtccaaagttgcaatttagttataagatttgacccgtcatccacagtatgtagc
ttcatacaatcaagaggtcgtgcaaggatgaaaaattcagattacatcttgatggtaaag
agtggggattctaccactctctctcgacttcaaagatatcttgctagtggtgaaattatg
agaaatgaatctttatgccatgcttcgcttccctgtgtaccttttagaagtgattatgat
gaggaatcctattatgttgaaagcactggtgcagttgtgactctaagttccagtgttggc
ttgatatacttctattgctctcgcttgccatctgattgttattttaagcctacgccaaga
tgggataaggaaacatgcaccttgcatcttccaaagagctctcctttgcagaccttttcc
agtaaagatgatgctaaatattccaagcaacgcgcttgtttagaagcatgcaaacaactt
cataagtgtggtgctttaactgataatcttgtcccccaaatcgttgctgaggaatccgtg
gcacaagagatcgggaataaaccacttgatgatgaacaaccaatttatgttccgccagaa
tttgtgcattgttgtccccataattccagtgtagtgtatcattgctacctgattgaatta
aagcagaacttccattatgatatatcagcacacaatattgtgctagccatgagaactgag
cttgaatttgaagtccaaagcatgtgtcatgacttggacgttgacagaggaagctttgat
gtgaatttcaagtatgtaggcattattaaacttagcccagagcaggttcttttatctaga
cagttccaacgtacaattttcaaagttttgttgaaccatacttggaccaacaagttgagt
gaaaataacgagatttgtttgggagatggtcctagagttgattatcttctgctcccttca
actggtggtgaactgattagctgggagattgttctgtctgtattggtttcatcccaagaa
tattgtgtacatcgtggtatttcctcatccaaggacgtttcttatgacgtaccgaccaaa
agcggacttgtttgcatatgcagactccagaattctgtggtgtatactcctcacaatggt
catgtatattgcataacgagtgttttgagtgaactgaatggaaactcattactcaagatt
agaaaaaatgaaatgatggcttacaaggagtattacaaagtgcgtcacggcattgacttg
cgttttgagaaacagccattacttcgtgggaaaaagatctttccagtgcataactacatc
aagagatttaggaaacacaaggagcagggagaatcaagaaactcattagttgaactgcca
cctgaactttgttctataataatgtcccccatatctgtcaacacactttattcatattca
tttcttccttttattatgcatcgacttgaatcgatgctaatagccagcaacttgaaaaag
ttgaattcggatcattgcatgcaaaatgatattccaaccacaaaggtgttggaagcaata
acaacaaaaaaatgccaagagaaatttaatctagaatcccttgagacccttggtgattcg
tttcttaaatatgcgaccggtcaacatctttttagaacttttcaaaatgatcatgagggc
cttcttactttgaagaaagataggatagtttctaatgctgctctccgtaggcgtggatgt
gaacacaaaatttcgggttttattcgagatgaggcttttgatcctcaaaactgggatatt
cctggtgatacacatgaagtttaccaattaagagaggaagtccttttcagtgggagaaaa
gtttatgttcagagaaaaagaaagataaagagtaagaggatagctgacgttgttgaggct
ctaattggtgcctatcttagcactggtggagaaaaggcagcgatgcagtttctaaatcgg
attggtatagaagttaattttgattttgtaccctatgagagaccttttagagttgatgtg
cataagctcattaatgttggacatttagagtccctgctaaaatacacattcaacgatcgc
tcattgttgttagaagcaatgactcatggttcatacatgcttcctgagattccaagatgt
tatcagcgactggaatttcttggagactcagtattggattatgcaattactgtgcattta
tataacaaatacccgggaatgacacccgaattgttgactgacatgaggtctgcatctgtg
agcaatgattgctattcacgaactgcattaaaggctcagttgcacaaaagcatactacat
tgttctcatgacctccataaacatattagttcagccgttcaaaattttgagacgttgtct
tcagaagcaacctacggatgggaatctgagatttcttttcccaaggttcttggagatgtt
attgaatctttagctggagcaatatacgtcgattctggatacgataaagaaatagttttt
agaagtataagaccactgttagaaccgttagtgtcgcctgaaactttgaagaaacaccca
agacgggagctaaatgagttatgccaaaaagagaattacaaattgaagaaaactgttact
tctcgtgtgaatggaagatcatacgttacagttgaggttgaagttaatgggaggatattc
aaacatacggaaatctctttggatagggagacaggagagaaggttgcttccaaagaagtt
ctcaaatctctaaaggaggcctatcctatgctacataaataa
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