Cucumis sativus (cucumber): 101208774
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Entry
101208774 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101208774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101208774
03012 Translation factors [BR:
csv03012
]
101208774
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101208774
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101208774
Translation factors [BR:
csv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101208774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
NACHT
AAA_19
AAA_23
Dicer_dimer
NPHP3_N
T2SSE
Myosin_head
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
101208774
NCBI-ProteinID:
XP_011655799
UniProt:
A0A0A0KWI1
LinkDB
All DBs
Position
5:27531162..27543459
Genome browser
AA seq
1172 aa
AA seq
DB search
MKDRSPSSNAAVYVPPHIRLRSVVTPNNSSPASAVDCKLKTAPPSLLDSGTTASPCLHAR
SQELLPTGNSRLQCDTAYSDGAPTDSWSFNFECSHQSGIAPSVNIDLWKRKLALLLRDKE
KQELISREKKDRHDFEEIAALASRVGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVS
LPPGLLRRVDEHLGEFLSQKSRCKGFQDISVSRTSSSGSIATDEGLFEQPEPQGSSKAVM
EKILWRRSSHLRDQQQAWQSSLEGREILEFRRNLPAYKEKDALLDTISQNQVIIISGETG
CGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVAFERGEKLGESVGYKVR
LEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPR
RPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQID
DYGQEKTWKMSKQAPRKRKTQIASTIEDALTAADFKEYSLQTQESLSCWNPDCLGFNLIE
YLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRL
IFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVS
AQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFL
SRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCL
DPIMTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGY
DFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICNGLYP
GVCSVVQNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAI
SDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDLAETYQKLRVELEELIRIKLLNPKM
DLHSHHELLSAVRLLISEDQCEGRFVFGRQILQQPSKTSAPAAAAAPPPTAVSRIESGPG
GDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAA
EALEWLMGGNQMGHDYVNQMSMMLKRSKKDHN
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccgctctccttcatccaatgccgctgtctacgtccctcctcacatccgtctc
cgctccgttgttactcctaataattcatctcctgcttccgctgttgactgcaagctcaag
acggctccaccatcgctgctcgattcaggaaccactgcttcgccttgcctgcatgctcga
tctcaagaactgctcccgacggggaactcgcgtttgcagtgtgatacggcctacagcgat
ggagctcctacggacagttggagttttaatttcgagtgttcgcatcaatcgggtattgca
ccttctgtaaacattgatttgtggaaaaggaagttagctttacttttacgtgacaaggag
aagcaagagttgatttcaagggagaaaaaagatagacatgactttgaggaaatagctgct
ttggcaagtagagtgggactttatagccatctatatgccaaagttgctgtttttagtaag
gtcccattgccgaactacagatttgatttggatgatcggcgtccacagagagaggtctct
ttgcctcctgggttgcttagaagagttgatgaacatttgggagaatttctctctcaaaag
tctaggtgtaaaggttttcaagatatctctgtctctagaacaagcagcagtggaagcatt
gctacagatgaagggctttttgagcaacctgagccacaaggatctagtaaggctgtgatg
gaaaaaattctttggaggagaagttcacatctgcgtgatcaacagcaagcttggcagtca
tctcttgaaggaagagaaatactggaattccggagaaatcttcctgcttacaaggagaag
gatgcattattggacacaatctcacagaatcaggttattattatttcaggtgaaactggt
tgtggcaagactacgcaagttccccagttcattttggaatcagaaatagaatcactgcgt
ggggctgtttgcagcatcatatgtacacagccaagacgaatatcggctatgtctgtctct
gagagagttgcttttgaaaggggggagaaattgggtgaatctgttggttataaagtgcgg
ctggagggtatgaaagggagggatactcatcttctcttttgcactacgggtatcttgttg
agaagattgctggttgatagaaatttgaaaggcataactcatgttattgttgatgaaatt
cacgaacgtggaatgaatgaagattttctactcattgtcctgaaagatctccttcctcgt
cgaccagaattgaggttgattctaatgagtgcaactttagatgcagaacttttctcatcc
tactttggtggggctcaaataattcacattccgggattcacacaccctgtccgaactcat
tttctggaagatattctagaaatgacaggttacagattaactccatacaatcaaatagat
gattatggtcaggagaagacgtggaaaatgagcaaacaagcaccaagaaagaggaaaacc
cagattgcctctaccattgaggatgcccttacagcagctgattttaaggagtacagtctt
caaactcaggagtctttatcgtgttggaatccagactgtcttggttttaatctcatagaa
tatcttctagtcaggatatgtgagagcgaaacacctggagctattcttgtttttatgact
gggtgggatgacatcagttctctcaaggagaaacttcagtctcatcctttattaggagat
ccaactcgtgtcatgttgttggcatgccatggctcaatggccagttcagagcagaggtta
atttttactgaacctgacaaaggagtgaggaaggtagtgcttgcaacaaatattgccgag
acaagtatcacgataaatgatgtcgtgtatgttcttgactgtggaaaggcaaaagaaaca
tcatatgatgctttaaataacactccttgtttgcttccttcttggatatccaaggtttct
gctcaacaaagaagaggaagggctggccgtgttcaaccaggagaatgctaccatttatac
cctaggtgtgtgtttggttctttttctgagtatcagctaccagaaattttgagaacacct
ttacagtccctctgcttgcaaataaaaagcttaaagcttggaagtatatcggagtttcta
tctagggctttgcagtcaccagagctacttgcggttcagaatgctattgaatatttgaag
atcatcggagcattcgatgagagtgaaaatcttactgttttaggtcgttatttaactatg
ctcccaatggaaccaaaactgggaaagatgttgatagtaggtgctatcttcaattgcttg
gatcctattatgactgttgttgctggcctcagtgtgagagacccttttctaacgccactt
gagaagaaggatgccgcagaggctgcaaaatcccaattttctcaagatcatagtgatcac
cttgctattatccgggcttatggggcatggaaagaagccgagaggaactatggtggatat
gacttttgttggaagaacttcctttctatacaatcgatgaaggctattgattctttaagg
aaggagtttttttctttgcttagagatactggcttggttgatgggtactcagacacctac
aatgcctggagtcttgatgaacaactcatacgtgcagttatttgcaatggcctctatcct
ggagtttgctccgttgtgcaaaatgagaaatcattctctctcaaaactatggaggatggc
caggtgcttctgtattcgaactcggtgaatgctcgagagtcgaggattccatatccatgg
atagttttcaatgagaagattaaagtgaactccattttccttagagattcaacagctatc
tctgactcgatgctgcttctctttggtggaagcatctcaaaaggtgatcatgagggacac
ttgaaaatgttgggcggttttttggaattttttatgaaacctgatttagcagagacatat
cagaaattgagagtggaacttgaagagcttatacggataaagctactaaatccaaagatg
gacttgcactcccaccatgagctcctatctgctgtacgcttgcttatttcagaagaccag
tgtgaaggtcgatttgtttttggccgccagatccttcagcagccctccaagacatcagct
ccagcagcagcagcagcaccaccaccaactgctgtttcaagaattgaaagtggacctggt
ggggacaattccaagagtcagctccagactttactcacgagggctggatatgctgcaccc
atctataagactaagcaattgaagaacaatcaatttcgagcaactgtggaatttaatgga
ctgcaaattatgggacaaccttgtaccaacaaaaagaatgctgaaaaggatgcagcagcc
gaggctcttgagtggttgatgggtggaaatcagatggggcacgactatgtcaaccaaatg
tctatgatgttaaaaaggagcaagaaggatcataactga
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