Cucumis sativus (cucumber): 101209902
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Entry
101209902 CDS
T02486
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03440
Homologous recombination
csv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101209902
03450 Non-homologous end-joining
101209902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csv03032
]
101209902
03400 DNA repair and recombination proteins [BR:
csv03400
]
101209902
DNA replication proteins [BR:
csv03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101209902
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101209902
BRCA1-C complex
101209902
NHEJ (non-homologous end-joining)
MRX complex
101209902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
CCDC92
AAA_29
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
101209902
NCBI-ProteinID:
XP_004133980
UniProt:
A0A0A0L416
LinkDB
All DBs
Position
3:complement(8519871..8534209)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENRNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVFQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTESVKG
QMQELEKNIQDVDAKIHHAETLLKDVRKLQDQISTKTAERSTLYKEQQKQYAALSEENED
TDEELKEWKTKFEERIAILESKVSKLEREMNDLETKSSFLKQAINEYIWEISKLQTEAEV
HMSLKNERDSTIEELFARHNLGSVPNTPFSDEVASNLTNRIKLRLVDLDKDMQDKRLSND
VELKTAWDCYMDANDRWKNIDAQKHAKADIKRGIMKRIEEKESERDSFELQISHVDLSHI
DEREKNMQIEVERKTNQLAEREFESTIRQKQSDLYGIEQKIKAVNREKDIMAGDSEDRVK
LALKKAELDNHKKKHRKIIDEYKDKIRGVLKGRFPPEKDLKKEITQALRAVGMEYDDLNS
KSREAEKDVNMLQMKIQEVNHNLSRYQKEMESRKRFVESKLQSLDPLSFSVDLYLKALEG
AKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFTAEEEDEFVKKQRVKAAS
SAEHMKVLAVESSSSDSHFQQLDKLRMVFEEYVKLSNETIPNAEKELHQLNEELDEKSQA
LDDVVGVLAQVKADRDSVENLVQPIDTADRLYQEIQTLQKQVDDLVYKLDFRGKGVKTLE
EIQSELNTLQNTKDGLHNELEKLRDEQRYMENDLANIQIRWHTLREEKVKAANTLRDVRK
AEEELDRLTEEKGQVDLDEKHLAEALIPLSKEKDKLLNDYNELKDKLNREYEELGDKKRK
FQQEVETLLRTTSKIKEYLDLKKGERLKELQEKKAQAESQLQGCDSRKQEILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELARDIESLEEQILKIGGVSTVEAEIGKLSQERE
RLLSELNRFHGTMSVYQSNISKNKIDLKHVQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVTKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagtggacaagatgttgattaaaggcattcggagttttgaccccgaaaatagg
aacgtcatcaccttcttcaagccattgacgctgatcgttggccctaacggtgctgggaaa
actaccataattgaatgcttgaagctctcttgtactggcgagttgcctcccaatgccagg
tccggccacagcttcattcacgaccctaaggttgcaggagagacagagacaaagggacaa
atcaagcttcggtttaagacagcggcgggtaaggacgtggtttgcataaggtcattccaa
cttactcagaaggcatccaaaatggagtataaagcaattgaaagtgtgttccagacgata
aatccacataccggagagaaagtttgtctcagctatagatgtgctgacatggatagagag
attcctgcattaatgggtgtgtcaaaggctgttctggaaaatgtgatatttgttcaccaa
gatgaagctaattggccattgcaagatccttcaactctgaagaagaaatttgatgatatc
ttctctgctacaagatatacaaaggcattggaggtcataaagaagcttcacaaggatcag
gctcatgaaataaagacttacaaactaaagttggagaatcttcaaactttaaaagatgca
gcatataagctcagggaaagcatttctcaggatcaggaaaaaacagaatctgttaaaggt
cagatgcaagaattggagaagaacattcaagatgtcgatgccaaaattcatcacgctgaa
acactcttgaaagatgtgcggaagctacaagatcaaatatctactaaaactgctgaaaga
agcactctatataaggagcagcagaagcagtatgctgctctctctgaggagaatgaagac
actgatgaagaactgaaggaatggaaaaccaagtttgaagaaagaattgctattttggag
tctaaggtaagcaagttggagagggagatgaatgacttggagacaaaaagctcctttctt
aagcaggcaattaatgaatatatatgggagattagtaagcttcaaacagaagctgaggtg
cacatgtcattgaagaatgaacgtgattctactattgaagaactttttgcgagacataat
cttggttctgtaccaaatactcctttcagtgacgaagttgcatccaacctaaccaataga
ataaaattaagactagtagaccttgacaaggatatgcaagataaaaggctttcaaatgat
gttgaacttaagacagcatgggattgctacatggatgcaaatgatcgatggaaaaatatt
gatgcccaaaaacatgctaaagcggacatcaaaagaggaatcatgaaaagaattgaagag
aaggaaagcgagcgcgattcatttgaacttcaaatttctcatgttgatctttctcacatt
gatgaaagagaaaaaaacatgcaaattgaagttgagagaaagacaaaccagcttgctgaa
agagaatttgaatcaacaatacgtcaaaagcaaagtgatctatatggcattgagcagaaa
attaaggctgttaacagagagaaggacataatggctggtgactctgaggacagagtaaaa
cttgctctcaagaaagcggagttagataatcataaaaagaagcaccgaaagataattgac
gagtacaaggacaaaattagaggagtgctaaaggggagatttcctccggagaaagatttg
aaaaaagaaatcactcaagcactcagggctgttggcatggagtatgatgacctaaattct
aaatcacgtgaagctgagaaggatgtgaatatgttgcagatgaaaatacaggaagttaat
cataacctttccagatatcaaaaggaaatggaatcaagaaagagatttgttgaatccaaa
ctccagtccttggatccactctcctttagtgtagatttgtatctcaaggccctggaaggg
gctaaggagaaaaaagatgtgcaaaaaagcaagtacaatattgcagatggtatgcgtcaa
atgtttgatccatttgaaagagttgcccgtgcccatcatgtttgcccttgttgtgagcgc
cccttcacagcagaagaagaagatgaatttgttaaaaagcaaagagtgaaggctgcaagt
tctgctgagcatatgaaagtgcttgcagtggagtcttctagctctgactcccattttcag
caactggataagctccgcatggtatttgaagaatatgtcaaacttagcaacgaaacaatt
cctaatgcagagaaagaacttcatcagcttaatgaagagctggatgagaagtcacaggcc
cttgatgatgtggtgggtgtcttagcgcaagtaaaggctgatcgggactcagttgagaac
ttggtgcaacctattgacactgccgacaggctttaccaagaaattcaaactttgcaaaag
caagttgacgacttggtctacaagcttgattttcgagggaaaggtgtgaaaacattggaa
gaaattcagtcggagttgaatacattgcaaaacaccaaagatggtttacacaatgaacta
gaaaagctaagggatgaacaaagatacatggaaaatgatttggccaacattcagataagg
tggcacactctaagagaggaaaaagtgaaagcagctaatactttgcgtgatgttaggaag
gctgaagaagagttggaccgtctgactgaggaaaaaggtcaagttgatcttgatgaaaag
catttggcagaagcccttatccccttgtcaaaggagaaagataaattacttaacgactat
aatgaactaaaagataagcttaatcgtgaatatgaggagctgggtgataaaaagaggaaa
tttcagcaggaagttgagacacttcttagaacaacatctaagattaaagagtatcttgat
ttaaagaaaggtgagaggctgaaggaactgcaggaaaagaaggcacaggctgaatctcaa
cttcaaggttgtgacagtaggaagcaggaaatattggctgaattaaacaaaagcaaggac
ttgatgcggaatcaagatcaattaagaagaaacattgaggataacttgaactaccggaaa
acaaaggctgaagttgatgagcttgcccgtgatattgaatcattggaagagcaaatttta
aagattggaggggtttcaaccgttgaggctgaaataggaaaactatctcaggaaagagag
aggctattgtctgagctaaacaggtttcatgggacgatgtctgtctatcaaagcaatatt
tcaaaaaataaaattgatttaaaacatgtgcaatataaggacattgacaagcggtatttt
gatcagctaatccagcttaagacaactgagatggcaaacaaggatttggatagatattac
aatgcccttgacaaagcactaatgcgcttccacaccatgaaaatggaggaaataaataaa
attataagggagttgtggcaacaaacataccggggacaggatatagactatataagtatt
cactcagattctgagggtgcaggaactcgttcatatagctacagggttctcatgcagact
ggagatgcagaactcgaaatgagaggaaggtgcagtgctggtcaaaaggttcttgcttct
cttataattcgattagcattggctgaaacgttctgcctcaattgcggaatactcgctcta
gatgagccgaccactaatctagatggtccaaatgccgaaagtcttgctgcagctctttta
cgaatcatggaggacaggaaagggcaggagaactttcagctcatagtaattacacatgat
gagcgtttcgctcagctaattggtcagagacagcatgcggagaaatattatcgtgttacg
aaagacgaccaccagcacagcataatagaaagccaagagatatttgattga
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integrated database retrieval system
