Cucumis sativus (cucumber): 101211075
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Entry
101211075 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101211075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101211075
03012 Translation factors [BR:
csv03012
]
101211075
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101211075
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101211075
Translation factors [BR:
csv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101211075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
AAA_16
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
101211075
NCBI-ProteinID:
XP_004137549
UniProt:
A0A0A0LS63
LinkDB
All DBs
Position
1:2569274..2577609
Genome browser
AA seq
1215 aa
AA seq
DB search
MPYSSSFFNSYFRRTSMSISFKPTSPFPFSTRFTPWTPRLFTRRNISMGFVNLHHSRPAS
VSGVVRCSTTQSKWVEVSLKEKQQDHVKGFKQRNIAFPFGQHQSSYNYGRFACDDVSSDE
SDVEFGSPQAQRSSSTLDNVDEWRWKLTMLLRNNEEVEVVSREKKDRRDFEQLSALATRM
NLHSRQYSRVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSYKSVSR
GCFSNSYLPNSGIAENCANNNGLFQHQEPSTTQSVVMEKILRRKSLQLRYQQQEWQESLE
GQKMIEFRKSLPAFKEREALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAS
CSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRL
LVDRNLKGVSHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFG
GAPTMHIPGFTYPVRAHFLENILEITGYKLTSYNQIDDYGQEKAWKMQRQAQALKKRKTQ
IASSVEDAFEAANFSAYSPRTQESLSYWNPDSIGFNLIEHVLSYIVKKERPGAILVFMTG
WDDINSLKDQLLSHPLLGDPSRVLLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAET
SITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYP
KCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISDFLSNALQPPEPLSVQNAIDYLKI
IGALDNKENLTVLGKHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSD
KKDLAESAKAHFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLR
KQFFFLLKDAGLVDYDSEKCNISNHDEHLIRAVICAGLFPGICSVVNKEKSVALKTMEDG
QVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNVSRGGLDGH
LKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLLNPKLDMEPHNELLTALRLLISEDH
CAGRFVFGRHMPVPSKKAMTDSLPRQKHGDGGGGDNSKNQLQTLLLRAGHETPTYNTKQL
RNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHASILLKKS
RKKNTNPSFHSAKWS
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcatcatccttcttcaactcctatttcaggaggacttccatgtccatctcc
ttcaaacccacttctccttttccattttcaacccgtttcacaccttggactcctcgtctt
ttcacccggaggaacatttcaatggggtttgtcaacttacaccactcccgtccggcctct
gtttctggtgttgttcgttgttccaccacccaatccaagtgggttgaagtttccttgaag
gagaaacaacaggaccatgtcaagggtttcaagcaaaggaatattgcgttcccctttggg
cagcatcagtctagctataattatggtcgctttgcgtgtgacgatgtttctagtgatgaa
tctgatgtcgaatttggctctccccaggcccaaaggagttcatcaacccttgataacgta
gacgagtggagatggaagttaactatgcttctacgaaacaatgaggaagtagaagtagtg
tcaagggagaaaaaggatagacgtgattttgagcaactttcagcattggcaacccgaatg
aatttgcatagccgtcaatattccagagttgttgtatttagtaaagatcccctgccgaat
tataggccggacctggatgataagcgaccacagagagaggtggtcttaccttttggtgtc
caaagggaagttgaaggtcatctaagattgtaccaatcttcttacaagtctgtgtcaaga
ggatgtttttcaaacagttacttgccaaattctggcattgctgaaaactgtgctaacaat
aatggactgtttcagcaccaggaaccttcgacaacacaaagtgttgtcatggagaaaatt
cttcgccgcaaaagtttgcaactgaggtatcagcagcaagaatggcaggaatctcttgag
ggccaaaaaatgatagaatttcgcaagagtctccctgccttcaaagagagggaagcattg
ttaaaggccatttcagaaaatcaggtagtcgttgtctccggtgaaactggttgtggcaaa
accacacagcttcctcagtatattttagaatctgagattgaagctgctcgtggagcttct
tgtagtattatatgtactcagcctagacgtatttctgccatgtctgtttctgaaagagtt
gctgcagaacgtggagagaaactgggagagtctgttggttataaagttcggcttgagggt
atgaaaggaagggatacccgtcttctcttttgcaccactggtgtactattgagaagattg
cttgttgacagaaatttgaagggtgtaagtcatgttattgttgatgagattcatgaacgt
ggaatgaacgaagattttcttgttattgtcctgaaagatcttcttcctcgccggccggat
ttgaggttgatcttaatgagcgcaactctaaatgccgagcttttttcttcttattttggt
ggtgctccaacgatgcatatccctggttttacatacccagttcgtgcacactttttggag
aatattcttgagattactggctataaattaacttcatataatcaaattgatgattatggt
caagaaaaggcgtggaaaatgcaaagacaagctcaagctctaaagaaaaggaagacccag
attgcttcatctgtggaggatgcatttgaggctgctaacttttcagcatacagtcctcgg
actcaggagtctctatcctattggaatcctgattccattggtttcaacctcattgagcat
gtcctctcctacattgtcaagaaggagaggccaggtgctatattagtttttatgaccggt
tgggacgatataaactctttaaaggaccagctcctgtctcaccctttattaggggatcct
agcagagtcttgctccttgcatgtcatggttcaatggccagctctgagcagaaattgata
tttgataaacctgaagatggagttaggaaaatagtcctagctacaaacatggcagagacc
agtatcaccatcaatgatgtggtttttgttgttgactgtggaaaagcaaaggagacatcc
tatgatgcactaaataacactccttgtttgcttccatcctggatctccaaggctgctgca
cgacaaagaagaggtagggctggtcgtgttcaacccggcgagtgttaccatctctatccc
aaatgcgtatatgatgcttttgctgattatcaactgccagaacttttaaggactccattg
cagtctttgtgtttgcaaatcaagagtctgcaacttggaagcatatcagatttcctatca
aatgcattgcagccgccagagcctttatcagttcaaaatgccatagattatttgaagata
attggagctctggataacaaagaaaatctaacagttcttgggaaacacttgtcagttctt
ccagttgagcctaaactagggaaaatgcttatattaggagctattttcaactgccttgat
ccaattatgactattgttgctggtcttagtgtgagagatcctttccttatgccatctgat
aaaaaggatttagctgaatcagcaaaagcacactttgctgcacgtgactgcagtgatcat
cttgccttagttcgagcttatcagggttggagagatgctgaaaaacagcaatccggttat
gagtactgttggagaaactttctctctatgcaaactcttagagccatcgactctctgagg
aagcagttcttctttttgctgaaggacgctggtctagttgattatgattcagaaaaatgt
aacatctcaaaccacgacgagcacttaatccgtgcagtcatctgtgccggtttgtttccc
ggaatttgctctgttgtgaacaaagagaaatcagtagctttaaaaacaatggaagatggt
caggttatgctatactcgaactcagttaatgctggatatccaaaaattccctacccttgg
ctggtgttcaatgaaaaggtgaaagtaaattcagtctttcttcgggattctactggggta
tctgactctgtcctgcttttatttggaggaaatgtttctagaggaggacttgatggtcac
ctcaaaatgctggatggttatttggagtttttcatgaaacctgcattggccgagacttat
ttgagccttaaaagggagcttgatgagcttgttcatcaaaaacttttgaatccgaagttg
gatatggagccacacaatgagctactcacagcgttaaggttgttgatttcagaggatcac
tgtgcgggtcggtttgtctttggtcgacatatgcctgtaccatcaaaaaaagcaatgacc
gacagtttacctcgacagaaacatggtgatggaggtgggggtgataattccaagaatcag
cttcagaccctacttctgagagctggacatgaaacaccaacttacaataccaagcaatta
agaaacaatcagttccgctccactgttattttcaacggattgaactttgtgggccaaccc
tgtggcagcaagaaacttgcggaaaaagatgcggctgctgaggctcttctatggctacag
ggtgagacacattcatcttcccaagctatcgatcacgcttccatacttctaaaaaaaagc
agaaagaaaaataccaatccatcatttcatagtgccaaatggagttga
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