Cucumis sativus (cucumber): 101211283
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Entry
101211283 CDS
T02486
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101211283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101211283
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101211283
mRNA degradation factors
5'-3' decay
Decapping complex
101211283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
PEP5_VPS11_N
DUF445
Sey1_3HB
GerPC
HAM1_C
Motif
Other DBs
NCBI-GeneID:
101211283
NCBI-ProteinID:
XP_004148288
UniProt:
A0A0A0L4T2
LinkDB
All DBs
Position
3:3338738..3350078
Genome browser
AA seq
1417 aa
AA seq
DB search
MASPGNPNPNPTNPPFDVQKFFKPTTISNPTPTSQNPTLMNSPPFPPPSSSYPPPTGPFS
YPLQNAPFHHPYHSPHHPNQLPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNVVVPQNNP
AQSSGARIMAMIRAPGSNLEQFPQPSAPLGSMPSPSSAVPESSTPPPNVPIMTTIPMMQG
VNPGISPTGPVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLV
LGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVG
GRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKAV
LRIDTTKVGKGESFSAESPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMD
GTIKIWEDRKTSPLLVLRPHDGQPVNAATFLTAPNRPDHIVLITAGPLNREVKIWSSASE
EGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHL
DYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQC
LPPPLDNVGLEKADSSVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGPESAI
AERYPASTNSQDAVLVANTESKPATLSPVPSNTDIVSTASPPLPLSPRLSRNLSGFRSPV
VAFDPISAVSDHAGDRRGNDYTVNRQLDAMHTNLSEVSSLDDESRNNEEKIAREDLSNVL
SPPIVFKHPTHLITPSEILMAVSSSETTNIIEGGKSDSETNIQDVVVNNDNEDAELEVKE
VGEMKSPQNGEYGSRGEPQNLSLENKEKYFCSQASDLGMEVARECSALSSETYVIEEAPQ
VDGNIIASEVDSQAGEGDRTSGKDVSDKLPESSMSTTLQIPTPSSKGKKNKGKNSQASGF
VSPSPSAFNSNESSIEPCGSSSLPQSDAAFPPLLAIQDTLNQIMSTQKEMQKQMQMTFSV
PVTKEGKRLEAALGRSMEKALKANHDALWARIQEESAKNEKLLRETTQKVTSLVANFVNK
DLPAFLEKAMKKEMSAIGPAVVRTITPAIEKTISSAITDSFQRGVGDKAVNQLEKSVSSK
LEATVARHIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHS
AAAQQHFDSSHSPLAHALRDSINSASTIAQSLSGELAEGQRKLIALATAGANASSLNPLV
SQLSNGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTAALQRSDVNIVSWLCSQVDLR
AVLANPLALSQGVLLSLLQQLACDINKDRSRKIAWMTEVAAAVNPADPMIAMHIRPIFEQ
VYQILNHQRSLPTVSPVELTGIRIIMHLVNSMMVTCK
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctgggaatccaaacccaaatcccacaaacccaccttttgatgtccagaaa
ttctttaaacccaccaccatttcaaaccctacaccgacttcccaaaaccctaccctcatg
aattcacctccatttccacctccttcttcatcttaccctcctcccactggtcctttctct
tacccacttcaaaacgccccattccatcatccttatcattctccccaccatcccaatcaa
cttccttactctcaagaccaattctctaatcttcatcatcagcgttctctttcttacccc
actcccccccttcagccttctcctcctccggttaatgttgttgttcctcagaataatccg
gctcagagctctggtgcgaggataatggccatgattagagctcctggttctaatctcgaa
caatttcctcaaccctctgctccattgggttcgatgccatctccttcttcggctgttcct
gaatcttcaacgcctccccctaatgttcctattatgactaccattcccatgatgcagggg
gttaatcctgggatttcgcctactgggcctgttcgaatgccgagcagtaagcttccgaaa
gggcggcatttaattggtgatcatgtggtgtatgatgtgaatgttaggttgcaaggagag
atccagccacagcttgaagtgacgccaattaccaaatatggttcagatcctcagcttgtg
ttgggacgtcaaattgcagttaacaagacatatatatgttacggattgaaacaggggaat
attcgagttcttaatatcaataccgctctaagatctttgtttcgaggccacgaaaagagg
gtcactgacatggcattttttgctgaagatgttcaccttttggctagcgttgacgtaggt
ggacgagtttatgtctggaagatttctgagggccctgatgaagaaacaaagccgcaaatc
actgggaaagttgttatctcccttcacatggaaggaggagaaggagaaattgtgcatcca
cgagtttgctggcattgtcacaaacaggaagttttggtagttggatttgggaaggctgtt
ctcaggattgacacaaccaaagttgggaagggtgaaagcttttctgctgaatctcctctc
aaattttctcttgataagttgattgatggggtccagcttgttgggaagcatgatggagag
gtgactgagttgtccatgtgccagtggatgacttcacgattggtttctgcttctatggat
ggaacgatcaaaatctgggaagaccgcaagacatcacctttgctggttttgagaccacat
gatggccaaccggttaatgcagccactttcttgactgctcctaatcgaccagatcacatt
gtactcataacagctgggcctttgaatcgggaagtgaaaatatggtcatccgcaagtgag
gaaggttggctgcttcctagtgacgctgaatcatggaaatgcacccagaccctagaattg
aagagttcagctgaaagccaagttgaagaggctttctttaatcaaattgtagcactgtct
caagctggcctccttttgcttgctaatgctaagaaaaacgctatatatgcaattcacttg
gattatggtcttaatccagcttcgacacggatggattacatagcagagtttactgtcacg
atgcccattttaagttttactggaacaagtgaaatattagaccgtctaacacatattgtc
caggtttattgcgtacaaacacaagcgattcagcagtatgctttggacttgtctcagtgc
ttacctccaccactggacaatgtaggtttagagaaggcagattctagtgtttcacaggat
tctgctggtgtggaaggtctggctgcattgtttccttctgggagcaaaccaactgacaca
cccttcactagttctacacccaggggttcagtgctggtcaatggccctgaaagtgctatt
gcagaaagatatcctgctagcaccaattctcaagatgcagtgttggttgcaaatacggaa
tctaaacctgctacactgtcgcccgtacctagtaacacagacattgtctctactgcgtca
cctccacttcctctgagcccccgcttgtccagaaatctgtctggttttagaagtccagtg
gttgcctttgaccctattagtgcagttagcgatcatgccggtgaccgacgtggtaatgat
tatacagtcaaccgacaattggatgccatgcacacaaatttgtctgaagtgtcttccttg
gatgatgaatccagaaacaatgaggagaaaattgcacgggaagatttgtctaatgtcctc
agtcctcctatcgtgtttaagcatccaactcatcttattactccctctgagatactgatg
gctgtttcttcgtctgaaacaaccaatatcattgaaggtggtaagagtgatagtgagaca
aatatccaggatgtagtggttaacaatgataatgaagatgcggagctggaggttaaagag
gtgggtgaaatgaagtctcctcagaatggtgaatatggtagtagaggtgagcctcaaaac
ctttctctggagaacaaggaaaaatatttctgctcacaagcgtcagatcttggtatggaa
gtggcccgggagtgtagtgcactatcatctgaaacttatgtcattgaggaagccccgcaa
gttgatggtaatataatagcatcagaggttgattcccaagctggtgagggagatagaact
tccggcaaagatgtgtctgataagcttcctgaatcatctatgtcgacgactttgcaaatt
ccaactcctagttcaaaggggaaaaagaacaaggggaaaaattctcaagcttcaggcttt
gtttctccatctccaagtgctttcaattctaatgaatcgtccattgaaccttgtggtagt
tcaagccttccccaaagcgatgcagctttccctcctttactggccatccaagatacgttg
aatcagataatgagcactcagaaagaaatgcaaaagcagatgcagatgacattttcagtt
ccagtcacgaaagaaggtaaaaggctggaagcagctcttggacggagcatggagaaagca
ttgaaagcgaatcatgatgcattatgggctcggattcaggaagaaagtgctaaaaatgag
aaattgttgcgagaaactacacaaaaagtaactagtttagttgcaaactttgtgaacaag
gacttgcctgcctttttagagaaagctatgaagaaggaaatgtctgccattggacctgct
gtggttcgcacaataacacccgctattgagaaaacaatttcttctgccatcactgattct
ttccagagaggagtaggtgataaggcagtaaatcaactagagaaatctgttagctcaaag
cttgaagctactgttgctaggcacatccaagcgcagtttcaaacatctggcaagcaagct
ctgcaggatgcattaaaatctagttttgaagcatcagtgattccagcctttgaaatgtcg
tgcaaaaccatgtttgagcaagtagattctacctttcagaaaggactggttgaacattca
gctgcagctcaacaacactttgactcttcacattctccattggcacatgctttgagggat
tctataaattcagcttcaacaattgcgcagtccttgagtggagaattggctgaaggccaa
agaaaactgatagcccttgcgactgcaggagcaaatgctagttcattaaatcctttagtt
agccaactaagcaatgggccattgggtgctcttcatgagaaggttgaggttcctttggat
cctacaaaagaactgtcgagattgttatctgaaaggaaatacgaggaagctttcaccgct
gctttacagagaagtgatgtgaacattgtatcttggttatgttctcaggtcgatcttaga
gccgttttggcaaatccccttgctttgagtcaaggagtactgctgtcacttttgcaacaa
ttagcatgtgatatcaataaggatagatcccggaaaattgcatggatgactgaagtggct
gctgctgtaaatcctgcagacccaatgatagcgatgcacatacggcctatctttgaacag
gtgtatcagattttgaaccatcaacggagcttgccaactgtttctccagtcgagctcact
ggcattcgcataatcatgcatcttgtcaactccatgatggtaacttgtaaatga
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