Cucumis sativus (cucumber): 101212515
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Entry
101212515 CDS
T02486
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csv03009
]
101212515
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
101212515
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_HPS5
NBCH_WD40
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_like
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Ham1p_like
XRCC1_N
Motif
Other DBs
NCBI-GeneID:
101212515
NCBI-ProteinID:
XP_031738866
LinkDB
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Position
1:complement(5921677..5924962)
Genome browser
AA seq
483 aa
AA seq
DB search
MAVFFFEHQKMGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLR
NEFFVASQTRKEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGN
IHLWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNS
QPIVYCLMEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAI
VLHPTEQVLFSGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLIS
ASEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKY
PQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLE
RRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTL
SFH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttttttttttgagcatcagaaaatgggcaatggcggcgaaagtatggcgttg
gctgtttgcagcgatagaaacatgggattagggattactatttgggatgtgaaaacaggc
caaactctccttcacattccgacttgcgcttcgcctccctacggcttcatttgcttgaga
aacgagttctttgttgcttctcagactcgtaaggaagggtccgttggtggtggatccatt
ttcatttggtcactcaacaagcctctgccgcctgttacgagctatacattagagaccatt
ggaccacttgcctcaacaaaggatggtgtatatcttgcaggtggaactcattcaggaaat
attcatctttgggaggttggtagtggggaactgctcaagctttggagtggtcatcataaa
cctgtaaagtgtgtcctattttcttgggacgattcatttctcattactggttcatctgac
ggaatgatttgtgtctggtccatgattagtttgttggatgtggaacttgtgggaaactca
cagccaatagtgtattgtctcatggaacataattcttctttaactggtctactcaccatg
tctggctgctcgatgtcgataatcatttcaagctccctcgatggcagtttaaagttttgg
gacttaatgtcaggaatgatcaggggaactcaagctcatatagaggggatcaccgcaatt
gttcttcatccaactgagcaagttctgttctctggcactgttgacgggcaaatttttgct
agcaggcttgaatttggatttgataactgcattaccattagagaaaatcaaatacttgca
ccaaaaggacacaaaggagctattactgctctggcttttagtcagatgtatctaatttct
gcatccgaggattgtactgtttgcataagggacatcagcagtcagaggatcatacaaaag
cttgaccataaaaaagggagaataaccaatttggtagcaattccgcggtcgtccttaatc
tctacgtcaaatcgtaagagagtctcgaatcaatcctccatgtcctcactcgacaagtat
cctcagcctgccaacttgatgaagagcacgattcctctcttttcatccatccaaccgctt
ggggagaatctgaattccatcagattcacaagtaccagctcattgaatcaacaaatactt
gatatgaagacagaagggacatcagcagcaatacagatgaaagtagaaacaagcttagaa
aggcgaatgtgggcgtccagaatgacaaaggaagtgatggacatgaataaccatcttcaa
tcaaggttactagacatgatgcggattcgattgttcgagcctgcaaaaattagctcgtcc
tcaaagaaacaaaaagatgaaagagatcgagttgcaaagaagagggagaagcgtacattg
tcattccattaa
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