Cucumis sativus (cucumber): 101213130
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Entry
101213130 CDS
T02486
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101213130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101213130
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101213130
mRNA degradation factors
5'-3' decay
Decapping complex
101213130
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
101213130
NCBI-ProteinID:
XP_004147742
UniProt:
A0A0A0KVF1
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Position
4:5071377..5081133
Genome browser
AA seq
808 aa
AA seq
DB search
MEQSDVNDLRDSAENSSANSLFDASRYEFFGQNVVGEVELGGLEEDEDAPLFGSTDEEYR
LFVREESAGLGSLSEMDDLASTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWAQD
GDFCNWLEQHVFDPECAQEEKKWSSQPQSSVRLPDPKPLYRTSSYPQQQPTQHHFSSEPI
IVPKSSFTSFPPPGSRSQHGSPRHLKSIQSLADGSQLPFSAPNITSLSKSNLQLAGMHHG
LHYGGNMHQYTTPGLSFSSRPQNQWINNAGLLHGDHSNLFNSILQQQLSHQNGLLSPQLL
SAHQQLQQHRLHHPVQPSLAHFAALQSQLYNAHSPSSHRAMLGLSDVREQKPKSQRGKHN
MRSSQQGSETGSQKSDSGSIQFRSKHMTADEIESILKMQHAATHSNDPYIDDYYHQARVA
KKATGSRLKNAFCPSRLRELPSRSRSGSDQHSHSTPDSLGKIPLASIRRPRPLLEVDPPL
SGSCDGGSEQTISERPLEQEPMLAARITIEDGLCLLLDIDDIDRLLQHNKPQDGGVQLRR
RRQMLLEGLAASLQLVDPLGKSSHGVGPSPKDDIVFLRLVSLPKGRKLLSKFLKLLFPGS
ELARIVCMAIFRHLRFLFGGLPSDPGAAETTSNLSKTVSTCVNGMDLRALSACLVAVVCS
SEQPPLRPLGSSAGDGASIVLKSILERATELLTDPHAASNCSMPNRALWQASFDEFFSLL
TKYCVSKYETIVQSLFSQTPSSTDVIGSEAARAISREMPVELLRASLPHTNEPQRKLLMD
FAQRSMPVSGFSAHGGSSGQMSSESVRG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaacaatctgatgtcaacgatttgagggactctgcggagaattcctctgccaattcg
ctctttgatgcttcacgatatgagttttttggtcaaaatgtcgtgggagaagtggagctg
ggtggtttagaagaagatgaagatgcccctttatttggatctacagatgaagagtatcgt
ttgtttgttcgggaagagagtgcagggttgggatctttatcggaaatggatgatttggca
agtacttttgcaaagttgaacaaagttgttactggaccaagacatccaggagtcattgga
gatcgaggatctggttctttttctcgagaaagttcatctgcaactgattgggcacaagat
ggagacttttgtaattggttagagcagcatgtatttgatccagaatgtgctcaggaggag
aagaaatggtcatcccaacctcaatcttctgttcgtcttccagatccgaaacctttgtat
agaacatcctcttaccctcagcagcaacctacacaacatcacttttctagcgaaccaatt
atagtaccaaaatcttctttcacatcctttcctcctccaggaagtaggtcccaacatggt
tcacctcgtcacctaaaaagtattcaatctcttgcggatggaagtcagttacccttctct
gcaccaaatatcacttctttatccaagtctaatttgcagttagctggtatgcatcatggc
ttgcattatgggggcaacatgcaccagtacaccactcccggcctttcttttagtagcagg
ccacaaaatcagtggattaacaacgctggtctattacatggggaccactcaaatctcttt
aacagtatattgcaacagcaactatctcatcaaaatggccttctgtcccctcagttactg
tcagctcatcagcagctgcaacaacacaggctgcaccatccagttcaaccttctttggcg
cattttgcagctcttcagtctcagctttataatgcccattcaccatcctcacacagagca
atgcttggattgtctgatgtgagggagcagaaacccaagtcccagagagggaagcataac
atgcgttcttctcagcaaggttctgaaaccggtagtcaaaagagtgatagtggatccatt
cagttcagatctaagcatatgacagctgatgagattgagagtatcctgaagatgcagcat
gctgcaacccacagcaatgatccatacatagacgactactatcaccaggctcgtgttgcc
aaaaaagctactggttcaagattgaaaaatgcattttgtccgtctcgattgagagaactt
ccatctcgatctcgtagtggttcagatcagcattctcattccacacctgattcattggga
aaaatacccctcgcttctattcgtagaccccggcctctgcttgaagttgatcctccactg
tcaggttcatgtgatggtggttctgaacagacaatatctgagaggcctctggagcaggaa
ccaatgcttgctgctagaatcaccattgaagatggtctctgtcttctccttgatatagat
gatattgataggcttttgcaacataataaaccacaagatggtggagtccagcttagacga
aggcggcagatgctgctagaaggtttggcagcatcgcttcagcttgttgacccacttgga
aaaagtagccatggtgttggcccatctccaaaagatgatatcgtgttcttgcgtttggtt
tctcttcccaaaggtcgaaaacttctttctaaatttctgaagctgcttttccctggtagc
gagcttgcacgaattgtctgtatggctatttttcgtcacttaaggttcttgtttggtgga
cttccatctgatcctggagcagctgaaacaacatctaatctttccaagactgtttctact
tgtgttaatggtatggaccttcgtgcactaagtgcttgtcttgttgctgttgtctgttcc
tcagagcagccaccactgcgcccccttggaagttctgctggagatggggcctctattgtt
ctgaagtccattcttgaaagagctaccgaactattaaccgatcctcatgctgctagtaac
tgtagcatgcctaaccgtgcactctggcaggcatcctttgatgaattcttcagtcttctt
acgaagtactgtgtgagtaaatatgagactatagtgcagtcattattttcgcagacacca
tcgagcaccgatgttatagggtcagaggcagccagagccattagccgtgaaatgcctgtg
gagcttcttcgtgctagtcttccccacacaaatgaaccccagaggaagcttttaatggat
ttcgctcagcgttccatgccagtttctggattcagtgcccatggtggaagtagtgggcaa
atgagttcagaatcagttaggggttag
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