Cucumis sativus (cucumber): 101213136
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Entry
101213136 CDS
T02486
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101213136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101213136
03019 Messenger RNA biogenesis [BR:
csv03019
]
101213136
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101213136
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101213136
U7-dependent histone pre-mRNA processing factors
101213136
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
101213136
NCBI-ProteinID:
XP_011653694
LinkDB
All DBs
Position
4:15574616..15593777
Genome browser
AA seq
1325 aa
AA seq
DB search
MVGMMMAVNSRERLYGLINSTKIASDIPSKLARLRQLKNVLLPEDPVLLSELLPRILELQ
SDRFSPIRKFVTEMIGEIGFKHIDLLPQIVPLLITVLTDDTPAVVRQSITCAIDLFRISL
VKIAMKGLYSSEMDNSLQSLWTWMLKFKEEIYSIAVHGNGGMSLLALKFVVEVILLYTPD
PSVSTEPPACEESSVDFNISWLRGGHPILKIRDLSTEASQSLGLLLDQLRFPKVKSLNNT
KIIVLINSLSTIANRRPAFYGRILPVLLGLDRSGTIFNGLHAPGVHFALKNAFLNCLKCT
HPGALPWRDPLIGAVREMKVRGGADPSLNQVSTDNGSVKEEQGDGHLDEKAAVLSTSSVM
QNNLGRKRAGEPDSCDLSEDGNGSGKRARPTTNVSDTEEPSKEIGRSTVVSKQNASSSGT
SPTEDVDTGPAQQLVTMFGALVAQGEKAIGSLQILISSISADLLAELVIANMRFLPPHQP
DTGGGELLQNMCIVGSDVQAKYPSSFVADVLSLSSTFPPIASLLDSSRSLSDHMKPQEEE
DHHAVPVPIVDRVGTSHDFENAITPTNLPGSKASISEAEEVCSIIPSSIHDMGNLDSGIP
GLDSSVQSDGMSDTAVTPSLASSGFDESNQENISTLDLTSSKLSGEKSEELSPKAVVSDV
NSLASSTATSAAVSFQLVLPKMSAPVVDLVDEEKDELLKLAFVRIVEAYKQIAVAGGSQA
RSSLLAYLGVEYPLELEAWKVLQNHILADYVNNEGHELTLRVLYRLFGEAEEEHDFFTST
TAASVYETFLLTVAETLKDSFPPSDKSLSRLLGEAPYLPKSVINLLECMCSPGNSENADK
DTLSGDRVTQGLSAVWSLILLRPPIRDVCLKIALQSTVHLSEEVRMKAIRLVANKLYPIP
SISQRIEDFSKEMLLSAISDLATDMTDADGLASESHKQDAHPEKSLVESSAIGKDISSDT
HPSSISQVDTSLPISEAQRRMSLYFALCTKKHSLFRQIFVMYKDASKGIKQAVHDHIPIL
VRTMGSSSDLLEILTDPPSGSENLVMQVLHILTDGIIPSSELVFTISKLYNSKLKDVEIM
IPVLPYLPKDEVMMIFPHIVNLPGDKFQAALLRILQGSSQSGPVLNPAEVLIAIHGIDPD
RDGIPLKKVTDACNACFEQRQTFTQQIIAKVLNQLVEQIPLPLLFMRTVLQAIGTFPALV
DFIMEILSRLVGKQIWKYPKLWVGFLKCVLLTKPQSFNVLLQLPPTQLENALNKTAALKA
PLVAHASQPNIRSTLPRAVLTVLGITLDAQNTSQVQSSQTNMVDSSNSEKEVAVPEKSKE
SSVAG
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggtcggaatgatgatggctgttaattcaagggagaggctatatggtcttatcaactca
accaaaattgcttctgatattccttcaaaacttgctcgtttgcgtcaattgaaaaatgtt
ttgctaccggaagaccctgttttactatctgaactcctccctcgcatccttgagctacag
tcagaccgcttcagccccatacgcaagtttgtcacagagatgattggtgaaattggattc
aagcacatcgacttattgcctcaaattgtacctttattgataacagttttaactgacgat
actccggcagttgttcggcagtccattacttgtgccattgatttgtttcgcatcagtctt
gtgaaaattgcgatgaagggtctatattctagcgagatggacaattcacttcaatcactg
tggacatggatgttaaagttcaaggaagagatatattcaatagccgttcatggaaatggt
ggaatgagtttgctagctctcaagtttgttgtagaagtaattttactttacacacctgat
cccagtgtctctacagagcctcctgcttgtgaagaaagttctgtcgatttcaatatatca
tggcttcgtgggggtcatcctatactcaagattcgggacttatcaactgaagctagtcaa
agtttgggtttgttgctagatcaactcagattcccaaaagtgaaatctctcaataacaca
aagattattgtgcttattaatagtctttcaacaattgcaaataggaggcctgcattttat
ggccgaattctgcctgtattacttggccttgatcgctcaggcactatctttaatgggttg
catgctcctggtgtacattttgctttaaagaatgcatttctcaactgcttgaagtgtacc
catcctggtgctttaccgtggcgggatcctctaattggtgccgtgagagagatgaaagtt
aggggaggggctgacccatcccttaatcaagtttcaacagataatggatctgtaaaggag
gagcagggcgatggccatttggacgagaaggctgctgttctaagtacttctagtgttatg
cagaataatttggggaggaagagagctggagaaccagacagctgtgatttgtcagaggac
ggaaatggatctggaaaacgtgccagaccaacaactaatgtctcagacaccgaggaacct
tctaaagaaatagggaggagtactgtcgtgtctaaacagaatgcatcatcaagtggaaca
tcgccaacagaagatgtggatactggaccagcgcagcaacttgtaactatgtttggtgcc
ttagtcgctcaaggagaaaaagctattgggtccttacagattcttatctctagtatttct
gctgacttgcttgctgagcttgtcattgctaatatgcgtttccttcctcctcatcagcct
gatacaggaggtggagaacttctgcagaatatgtgtatagttggtagtgacgttcaagcc
aaatatccatcatcatttgttgcagatgttctttcattatctagcaccttcccaccaatt
gcgtcgttgttggattcttctaggtcattatctgatcacatgaaacctcaagaggaagaa
gaccaccatgcagttccagttcctattgttgaccgcgttgggacaagtcatgattttgaa
aatgccattacaccaactaatttacctggttccaaagcttcaatatctgaagcggaagaa
gtttgctcaatcattccatctagtatacatgatatgggcaatttagacagtgggatacct
ggacttgattcttctgttcaaagtgatgggatgtcagacaccgctgttactccctcgctt
gcatcatctggttttgatgaatctaatcaagagaacatttcaactttggatctaacctct
tcgaaactatcaggagaaaaatcagaggagcttagtccaaaggcagttgtttcagacgtc
aacagcttggcttcttcaactgcaacttctgcggcggtgtcttttcagttggtcttgccc
aagatgtcagcacctgttgttgaccttgttgatgaagagaaggatgaattactaaaactg
gcatttgtgcgaattgttgaggcatataagcaaatagcagttgctggaggatcacaagcc
cgctcttctcttttggcatatttaggagtggagtatcctttggaattagaggcatggaaa
gtgttgcaaaaccatatattggctgattatgtaaataatgagggacacgagttgactttg
cgggttctgtataggttatttggagaagcagaagaggaacacgatttctttacatctaca
actgctgcttcagtatatgagacatttctgctcactgtggcagaaacacttaaagattct
tttcctccatcagacaagtcattaagtaggttactcggcgaagctccttatctaccaaag
tcagtcataaacctcttggaatgcatgtgctctcctggaaacagtgaaaatgcagataag
gatactctaagtggtgatcgtgtaactcaaggtcttagtgcagtgtggagtttgattctg
ttgagaccccctattcgtgatgtctgcttgaaaattgccttacagagcacggtacatctc
tccgaggaagtgaggatgaaggcaattcgtctggttgctaacaaactttatcctatacca
tccatttctcaacgaatagaagatttttccaaggaaatgctgctttctgccattagtgac
cttgctacagatatgacagatgctgatggactagcatcagaatcacataagcaggatgct
catccagaaaaatctttagttgaatctagtgccatcggtaaagatatttcttctgatacc
catccttcatccatttcacaagttgacacatctcttccaatctctgaggcccagcgtcgg
atgtccttgtattttgcactttgtacaaagaagcactcactttttcgccaaatttttgtc
atgtataaagatgcctcaaaaggaattaagcaggctgtccatgaccatatccctatactt
gtccgcacaatgggctcatcctcagatcttcttgaaattcttactgatcctccaagcgga
agtgaaaatcttgttatgcaggttttgcatatactgacggatgggattattccgtcatcg
gagttagtttttaccattagcaagctatacaattcaaaactaaaggatgtggagattatg
atccctgtattgccatatctacccaaagatgaggttatgatgatcttcccacatattgtg
aatcttccaggggataaattccaagcagcacttctacggatactgcagggatcatctcag
tctgggccagttctaaatccagctgaagttctaattgctattcatggaattgatcctgac
agagatggaattcctctcaagaaggtcacagatgcctgcaatgcttgctttgagcagcgt
caaactttcacccagcaaatcattgcaaaagttttgaatcaattggttgagcagatccct
cttccattattgttcatgcgcacagtattgcaagccattggtacttttccagcactggta
gattttataatggagattctatcacgtcttgttggcaaacagatatggaaatatcccaag
ttgtgggtaggctttttgaagtgtgtacttttgacaaagcctcaatcatttaatgtgctg
ctgcagctaccgccaacacaactcgaaaatgctttaaacaaaactgcagcactcaaggcg
cctttggttgctcatgctagccaaccaaatatccgatccacactcccaagggctgtgttg
actgttctaggaataaccttagatgctcagaatacaagccaggtgcaatcaagtcagact
aacatggtggattcaagtaactcggagaaggaggttgcagtcccagagaaatctaaagaa
tcgtctgttgctggttga
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integrated database retrieval system
