KEGG   Cucumis sativus (cucumber): 101213260
Entry
101213260         CDS       T02486                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101213260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csv03041]
    101213260
   03036 Chromosome and associated proteins [BR:csv03036]
    101213260
Spliceosome [BR:csv03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    101213260
 Complex B
    101213260
 Complex C
   U2 SnRNP specific factors
    101213260
Chromosome and associated proteins [BR:csv03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    101213260
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 101213260
NCBI-ProteinID: XP_004137159
UniProt: A0A0A0KVS0
LinkDB
Position
4:complement(7227863..7232256)
AA seq 1262 aa
MDLEIAKTQEERRKMEQQLASLNSVTFDTDLYGGNDKAGYVTSIPVNEDDENLESQVNVV
GRKLASYTAPKSLLKEMPRGVDEDEDLGYKKPQRIIDREDDYRKRRLNRVISPERHDAFA
AGEKTPDPSVRTYAEVMREEALKREREETLRAIAKKKEEEEAAKASGEKPKEPLASAAAP
QKRRNRWDQSQDDGGAKKAKTSDWDLPDTTPGRWDATPGRVGDATPGVGRRNRWDETPTP
GRLADLDATPAGGVTPGATPAGMTWDATPKLAGMATPTPKRQRSRWDETPATMGSATPMP
GATPAAAFTPGVTPVGGVELATPTPGAINLRGPMTPEQYNLMRWERDIEERNRPLTDEEL
DAMFPQEGYKILDPPASYVPIRTPARKLLATPTPMGTPLYAIPEENRGQQFDVPKEAPGG
LPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKA
REFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPA
LLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRT
ITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYAC
YYTKEVMYILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFRNFWVRRM
ALDRRNYKQLVDTTVEIANKVGVADIVGRVVEDLKDESEPYRRMVMETIEKVVANLGASD
IDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNN
KSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN
VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFEL
LEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET
CSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL
VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALG
AAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPALEDGENNVYSRPELAM
FI
NT seq 3789 nt   +upstreamnt  +downstreamnt
atggatttagagattgccaagacccaggaggaaaggaggaagatggaacagcagttggct
tctctcaattcagtcaccttcgatactgatctttatggtgggaatgataaagcgggttat
gtcacttccatccccgttaatgaggatgatgagaatcttgaatcccaagttaacgtggtt
ggtcggaaattggcatcctatacggcccccaagtctctattaaaggagatgccgaggggt
gtggatgaagatgaagatttggggtataagaagccgcagaggattattgatagagaggat
gattataggaaacgtaggttaaatagggtgatttcacctgagcgccatgatgcgtttgct
gccggtgagaagacgccggatccctctgtgaggacttacgcagaggtgatgagagaggag
gccttgaagagggagagagaggagacgttaagggctatagctaagaagaaggaggaagag
gaggccgctaaggcatcgggagagaaacccaaggagccacttgcatctgctgctgctcct
cagaagaggaggaataggtgggatcaatcgcaggatgatggtggagcaaaaaaggcaaag
acctcagattgggatttgcccgatacaacacctggaaggtgggatgctacaccaggccga
gttggggatgccactcctggtgtggggagaagaaataggtgggatgagactccaactcct
ggcaggttggctgatttggatgcaactccagcaggcggtgttacgccgggtgcaaccccc
gctggaatgacttgggatgcaactcctaaacttgctggaatggctacaccaactccgaag
aggcagcgatcacgatgggatgagaccccagcaacaatgggaagtgccactcctatgcct
ggagcaacccctgctgctgcatttactcccggtgtaactcctgttggaggggttgagctg
gctactcccacacctggggctatcaatttgcgtggcccaatgacccctgagcagtataac
ttgatgaggtgggagagagatattgaggagaggaaccgcccattgactgatgaagaactt
gatgccatgtttcctcaagagggatataagattctggaccctcctgcttcctatgttcca
attcgaacacctgcaaggaagttactcgccacccctacaccaatgggaactcctctttat
gccatcccagaggagaatcgtggccagcagtttgatgttccaaaggaagcacctggtggc
ttgccattcatgaagcctgaggattaccaatactttggggcattgttgaatgaggaagat
gaagaggaattgtctccagaagaacagaaagagcggaagattatgaagctcttgcttaag
gttaagaatggaacacctcctcagaggaaaacagctttaaggcagcttactgataaagct
cgtgagtttggtgcaggcccattgtttaaccgcattctgccactccttatgcagcctaca
ctggaggaccaggagaggcatcttctggttaaggttattgacagagtgctttataaattg
gatgaattagttcgcccctatgtgcacaaaattcttgttgtgattgagccattgttgatt
gacgaagattactatgcacgtgtagaaggtagagaaattatatccaatcttagtaaggca
gctggtttggccactatgattgctgcaatgcgtccagatattgacaacattgatgagtat
gttaggaataccactgcgagggctttcagtgttgttgcttctgcacttggaattcctgcc
cttcttccttttttaaaagctgtgtgtcagagtaaaaaatcatggcaagcacggcatact
ggaattaagattgttcagcagattgctattctcattggttgtgcagtgctaccacatctt
aggtctcttgtagaaattatagagcatggtcttaatgatgagaaccagaaggtcaggaca
attactgcactgtctttagctgctcttgctgaggctgcagccccatatggtattgaaagc
tttgattcagtcttgaagccactgtggaagggtattagatcgcaccgtggtaaggttttg
gctgctttcctgaaggcgattggttttattattcctttgatggatgcattgtatgcctgc
tactatacgaaggaagtgatgtacattctgattcgagagttccagtcacctgatgaagaa
atgaaaaaaattgttctcaaagtggttaagcagtgtgtgagcactgagggagttgaggct
gattatattcgcaatgatattctccctgaattctttaggaatttctgggttcgcagaatg
gcattagatcgaagaaattacaagcaacttgtggacacaactgttgagatagcaaacaaa
gtaggcgttgctgatatcgtaggtagagttgttgaagatctcaaggatgaaagtgaacct
tatagaagaatggttatggaaacaatcgagaaagttgttgctaacctgggtgcatctgat
atcgatgctaggttagaagagctattgattgatggtattctttatgccttccaagagcag
accagcgatgatgctaacgttatgcttaatgggtttggcgcagttgtcaattctcttggg
cagagagtaaaaccatatcttccccagatttgtggtaccattaagtggcggttgaataac
aagagtgcgaaggtgagacaacaagcagcagatcttatttcaaggattgcagttgttatg
aaacagtgccaagaggaacagctcatgggccatcttggcgttgtcttgtatgaatatttg
ggagaagaatacccagaggtcctgggttcaattttgggagctctcaaggctatagttaat
gttattggtatgacaaagatgacgcctcctatcaaggatttgcttcctaggttaacacca
attttgaagaacagacatgagaaagtgcaagagaactgcatcgaccttgttggtcgtatt
gctgatcgtggtgctgaatttgttccagcaagagaatggatgaggatctgctttgagttg
cttgagatgcttaaagctcacaagaagggtatccgtcgggctactgtgaacacttttggg
tatattgcgaaagccattgggccacaagatgttttggcaacattgttgaacaatctaaaa
gtgcaggagcgtcagaatcgtgtttgcactactgttgccattgctatagttgcagaaacc
tgttctccattcactgttttaccagcattgatgaacgagtatcgtgtgccagagcttaat
gtgcaaaacggtgtgttgaagtctctctctttccttttcgagtatattggtgaaatggga
aaggattatatatatgctgtgacaccattgcttgaggatgctcttatggaccgagatttg
gtccacagacaaactgcagcctctgctgtgaaacatatggctctaggggtagctggttta
ggttgtgaggatgccttggtccacttgctgaactacgtatggccaaacatttttgaaaca
tcaccacatgtcataaacgcggtgatggaagccatcgaaggaatgagggtggcattgggt
gcagccgttgtgctcaactactgcctgcaggggcttttccacccagctcggaaagttcga
gaagtgtactggaaaatctacaactcactgtacattggtgctcaggatgctcttgttgca
tcttatccagcattagaggatggagaaaacaatgtgtacagccgaccagaactggcgatg
tttatctga

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