Cucumis sativus (cucumber): 101213694
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Entry
101213694 CDS
T02486
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101213694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101213694
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101213694
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101213694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
101213694
NCBI-ProteinID:
XP_011657243
UniProt:
A0A0A0KG20
LinkDB
All DBs
Position
6:15043005..15051641
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AA seq
659 aa
AA seq
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MSGLLNSSLNGSTSNLPDGTGRSFATSFSGQSGAASPVFHHSGGGLHNIHGSFNIQNMSG
ALNSRNSTINSVPSGGVQQPTGTLSSGRFASNNLPVALSQLSHGSSHGHSGVTSRGGLSV
VGNPGFSSSTNAVGGSIPGILSTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVSGG
NIGRSVTAGGGLSLPGLASRLNLNANSGSGSLTVQGQNRLMSGVLPQGSQQVLSMLGNSY
PTAGGPLSQNHMQSVNSLNSLGMLNDVNANDNSPFDINDFPQLTSRPSSAGGPQGQLSSL
RKQGLSPIVQQNQEFSIQNEDFPALPRFKGGNADYGMDIHQKDQHENSVPMMQSQQFSIG
RSAGFNLGGTYSHRPQQQQQHSSAVSNSTVSFPPANNQDLLHLHGSDIFPSSHAASYHQQ
SSGPPGIGLRPLSSPNSASGMGYDQLQQHQQHHGQSQFRLQHMSGVSQSFRDQGMKSLQA
AQSSPDPFGLLGLLSVIRLSDPDLASLALGIDLTTLGLNLNSADNLHKTFGSPWSDEPAK
GDPDFNVPQCYVIKPPASLHQGYFSKFTLETLFYIFFSMPKDEAQLYAANELYNRGWFYH
KEHRFWFIRVSNMEPLVKTSTYERGSYLCFDPHTFETVRKDNFVLHYEMVEKRPVLSQH
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcatctcttaatggatcaacttcaaatcttccagatggtact
gggcgatcttttgctacctcattttctggtcagtctggtgcagcctcccctgtttttcat
cactctggaggagggttgcataacattcatggaagcttcaatattcagaacatgtcaggt
gcactaaattcaagaaattcaacgataaatagtgttccatctggtggggtgcaacaacct
acaggaacactttccagtgggcgttttgcatcaaacaaccttcctgttgctctttctcag
ttgtctcatggcagctcccatgggcattcgggagtcacaagtagaggaggtctaagtgtt
gttgggaaccctggatttagtagtagcacaaatgcagttggcggttctatacctgggatt
ctgtctacttctgctgctattggtaatcgtaatgctgttccaggattgggtgtgtccccg
attttgggaaatgcaggtcctcgaatcacaagttcaatgggcaatatggtcagtggaggc
aacataggaaggagtgtaacagcaggtggaggattgtcactacctggtcttgcttctcgt
ctaaatctgaatgcaaatagtggatcaggaagcttaactgtccaaggacaaaaccgtcta
atgagtggtgtgctaccacaaggatctcaacaggtcctttctatgttgggtaattcttat
cccactgctggaggtcccctttcccaaaaccacatgcagagtgtgaatagtttgaattct
ttggggatgttgaatgatgtgaacgccaacgacaactctccttttgacattaatgatttt
ccacagttaacaagtcgtccaagttctgcaggagggcctcaggggcaattaagttcactg
aggaagcagggccttagtcctattgttcaacaaaaccaagagttcagtattcagaatgag
gactttccagcattaccgagatttaaaggtggcaatgctgattatggtatggacattcat
cagaaagatcaacatgaaaattctgtgcctatgatgcagtctcagcaattctctattgga
aggtctgctggatttaaccttgggggcacctattcgcatcgaccccagcagcagcaacag
cattcttcagccgtcagtaacagcacggtctcctttccacctgcaaataatcaagatctc
ctccatttacacggatcagatatatttccatcttcacatgctgcatcttatcaccagcag
tctagtgggcctcctggtattggtctaagacctctgagttctcctaattcagcttctgga
atgggttacgaccaacttcagcagcatcagcagcatcatggtcaatctcaatttcgtttg
caacacatgtcaggtgttagccagtcgtttagagatcagggcatgaaatctttgcaggca
gctcaatcttctccggatccgtttggtttacttggtttgttaagtgtgataagactgagt
gatcctgatcttgcatcccttgcactcggaattgatttgaccacgttaggattaaatttg
aattcagcagataaccttcacaagacttttggctccccatggtctgatgagcctgccaag
ggtgatccagatttcaatgtacctcaatgctatgttattaaacccccagcttcactacac
caagggtatttctcaaaatttactctggagacgctgttttatatatttttcagcatgcca
aaagatgaagctcagttgtatgctgcgaatgaactttataatagaggctggttttatcac
aaagaacatcgattttggttcattagagtctcaaacatggaaccacttgtgaagactagc
acatacgaaaggggatcgtatctctgtttcgaccctcacacatttgaaactgtccgcaag
gataatttcgttctccactacgagatggtagaaaagagaccagttctatcgcaacattag
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