KEGG   Cucumis sativus (cucumber): 101214102
Entry
101214102         CDS       T02486                                 
Name
(RefSeq) exosome complex component RRP43 isoform X1
  KO
K12586  exosome complex component RRP43
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101214102
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101214102
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     101214102
SSDB
Motif
Pfam: RNase_PH RNase_PH_C SPRY
Other DBs
NCBI-GeneID: 101214102
NCBI-ProteinID: XP_004149399
LinkDB
Position
4:8714966..8733675
AA seq 304 aa
MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA
NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI
SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE
EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG
MEID
NT seq 915 nt   +upstreamnt  +downstreamnt
atgggactgccaaatgctgcttctggggacttgtcgtcgcaaatggaagtcgatgctttt
agacgactctttccaattcagttttatgagcgccatcttactgaatcaatacgtcctgat
ggaagatcactgggaaaagctagagacacaaccattgctcttggaccagtatcttctgca
aacgggtcagccctggctaagattggttcgacgacaatgttggctgctatcaaaatggaa
gtaatgacaccttctgttgagtcacccgatgagggttgcatagctcttgatttccacatg
cctccagtatgctctccaattgttaggcctgggagaccggcggaagcagcacctgtgatt
tcaaagcagttatctgacactatttcgagttctgggatgattgatctgagagaactatct
cttgttaaaggaaaagctgcttggatggcttacttggatatttactgtttggacgctgat
ggttctctttttgatgctgcacttctttctgcagcagctgcattttctcacttgcaaatc
cctgttgttgctctaaatgatgatggaaaagtagtatttgtctgtgaggaagaaggggga
gaaaactttgagaaggaacctgtcaataaagagaacaggaaactgaaattgaactctatt
cctttctcattaacgtgcctactccacaagaagtacatcttggccgatcctactgcagag
gaggagtccgtcatggaaactattgtaactgtggttttggattcatctggtcaacttgtt
tccttctacaagccgggtggatccgttcttgcttatacatcagctgttcaggattgcatt
gcattgaccagacaaagatcgaaagaactacagataattttagatgaagcaatttctggt
atggaaatcgactaa

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