Cucumis sativus (cucumber): 101214107
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Entry
101214107 CDS
T02486
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101214107
03015 mRNA surveillance pathway
101214107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101214107
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101214107
5.6.2.5 RNA 5'-3' helicase
101214107
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101214107
mRNA cycle factors
Common to processing body (P body) and stress granule
101214107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
nSTAND3
NPHP3_N
ATPase
SRP54
PhoH
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
101214107
NCBI-ProteinID:
XP_011650365
UniProt:
A0A0A0L1C7
LinkDB
All DBs
Position
3:1635294..1646275
Genome browser
AA seq
1269 aa
AA seq
DB search
MDSQQNNLFETASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRPPVAWPTPSDSLADHT
DRGGGSDHQSDASPVSAAPGSATKGRTGGGSGNTGGNNQMVDALAAGMSGLTFKDTGDDD
NYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPEC
LIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHP
SLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
SLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSG
PNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPQPYAIPTRGAVH
GPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQ
PSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQ
ASQTGYPIDYVGQGGQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGF
SDPSLDEASQSHYNVTNANPLQSQQGMMNSLYSQPFAHYNTQPSTLQAPPQQQPQQGQSS
QNQKIHFSG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaacagaacaatttgtttgaaaccgcatctcaacccgacaccgctaacgat
gcttacacatttcttgagttcaacacacagggggaagacttcgattaccctgaatttcgc
gaccctattaggccccctgtagcctggcccactccttctgattccttagcggatcatacg
gaccgtggtggcgggtccgatcaccagtctgatgcttctccggtttccgctgcacctgga
agtgccaccaaaggacggactggaggaggttcggggaatactggcggtaataatcaaatg
gttgatgcattggcagccgggatgagtgggttgacgtttaaggatactggggatgatgat
aattatgagtttggaaaagggaatttcacggagcatgcttgtaggtattgtggggtgtcg
aacccggcttgtgttgtgaggtgtaatgtaccctcatgtcgtaagtggttctgcaattcg
cgagggaacacctctgggtcgcatattgtgaatcatctggtccgggcaaagcataaggag
gtttgtcttcacaaggacagtcctctgggagaaacaattctggagtgctacaattgtggt
tgccgaaatgtattcctccttggatttatttctgcaaagacagaaagtgtggttgttcta
ctctgtagggagccttgcttaagtgtaaatgctctcaaggatatgaattgggacttgagt
cagtggtgccctctcattgatgataggtgcttcttgcagtggctggttaagattccttct
gagcaagagcagttgagggcacggcaaattagtgcacaacaaataaataaaattgaggaa
ctttggaaaacaaacccagatgcatcccttgaagatcttgaaaaacctggtgtggatgat
gaaccacagcctgtagcattgaaatatgaagatgcttatcagtatcaaaacgtatttgca
cctcttatcaagcttgaagctgactacgataaaatgatgaaagaatctcagagcaaagat
aatgtcactgtacgttgggacattggccttaacaagaagaggatagcttattttgtattt
ccaaaggaggacaatgaattgcgtcttgtacctggagatgagttgaggttacgttattct
ggtgatgcagctcatccagcttggcattctgttggtcatgtgatcaagctaactgcacag
gaagaggttgcacttgagcttcgtgcaagccagggagtcccagttgatgtagtccatggt
tttagtgttgattttgtgtggaagagtacaagcttcgaccgaatgcagggagctatgaag
acatttgctgttgatgagaccagtgttagtggttatatctaccatcacttattaggacat
gaagtggaggtccagatggtccgcaatacacttcctcgtcgttttggtgctcctggtctc
ccagagctcaatgcatctcaagtatttgctgtcaaaagtgttcttcagaagccaataagc
ttgattcagggacctccgggcactggaaaaactgtaacttctgctgccattgtgtatcat
atggccaaacaaggccaagggcaggtactggtctgtgcccctagtaatgtggctgtggat
cagctggcagagaagataagtgcaactggattgaaggttgttaggctatgtgcaaaatca
agggaagctgtaagttctcctgtggaacacttaacccttcattatcaggttcgacatctt
gacacatcggaaagaagtgaacttcataagctgcaacaattgaaagatgagcaaggggag
ttgtccagcagtgatgagaaaaaatataaggcccttaagagagcaacagagagggaaatt
tcacagagtgcagatgttatttgctgcacatgtgttggtgccggagacccacgcttgtca
aattttagatttcgtcaggttcttattgatgagtctactcaggccacggaacctgaatgt
ctcattcctcttgttcttggagcaaagcaggctgttcttgttggtgaccattgccaactg
ggacctgtcattatgtgtaaaaaagcggcacgtgcagggctggctcaatccctctttgag
cgtcttgttcttcttggtgtgaagccaattagattgcaggttcaatatcgtatgcaccca
tcgctttctgaatttccttctaacagcttctatgagggcacactacaaaatggagttacc
atcaacgaaaggcaatcaacaggcattgacttcccatggcctgttcccaaccgtccaatg
ttcttctatgttcagatgggacaagaggagataagtgccagtggaacttcctacctaaat
aggactgaggcagcaaatgtagaaaaaattgtgaccacttttttaaggagtggcgtagtc
cctagtcagattggagttatcacaccgtatgaggggcaaagagcttacatcgttaactat
atgtcaagaaatggtgctctcagacagcaactttacaaagaaattgaggttgcaagcgtg
gattcatttcaaggaagggaaaaagattatatcatattgtcatgtgtgaggagcaatgaa
catcagggcattggatttcttaatgatcctcgcaggctcaatgtggctttaacacgagct
cgatatggtatcgtcattctaggaaacccaaaggttttgagcaaacaaccactgtggaat
agcttattgacgcattacaaggaacacgagtgcttggttgagggccctctgaataacttg
aaacaaagcatgattcagtttcagaagcctaaaaagatatacaatgatcgacgtcttttc
tttgctggtgggcctggagtcgtgccaaatgataattttggacctgttgctccatccggc
cctaatgctgatagaagaagtagccgtggtagaggttcgtactttcctcctcacctgccg
aatggtgcccaaaagcctggtgtgcacgcatctggttatcccatgcctcgagttcccctc
ccctcatttcacggcggtcccccacagccatacgcaattccaactcgtggagctgtacat
ggaccagttggtgctgttcctcatgttcctcaaccaggaagtaggggtttcggggcaggg
cggggaaatgcaggtgctcctattgggagtcagcttccaaatcagcaaggctctcaacaa
aatattggaaatctcggttccacttttaactttcctggtttggagagtcccaatagccaa
ccatcagtgggtggtccattgtcccaactcgggtttgttaacaacatgcctgttcagcca
cctactcaaacatttcgcgatgggtactccatgggaggaatttcccaggacttcctgggc
gatgactttaaaagccagggatcacatgttccttataatgtcactgatttctccactcag
gcatctcaaactggatatcccattgattatgttggtcaaggagggcagggtggctttcca
gggagcttcctgaaccagaattctcaatctggatattcccgttttggaacaggaaatgat
ttcatgtcacaggattacatgaaccatggttcacagggtttatttactcaagttggtttc
agcgatccctcactggatgaagcatcccaaagtcactacaatgtgaccaatgcaaaccca
ctacagtctcagcagggcatgatgaattctctctactcccagccctttgcacattacaat
acacagccttcaaccctgcaggccccaccacagcagcagcctcagcagggacagagctcc
caaaatcagaaaattcactttagtggttga
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