Cucumis sativus (cucumber): 101214324
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Entry
101214324 CDS
T02486
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101214324
03015 mRNA surveillance pathway
101214324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101214324
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101214324
mRNA cycle factors
P-body specific factors
101214324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
101214324
NCBI-ProteinID:
XP_004143811
UniProt:
A0A0A0KS34
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All DBs
Position
5:complement(21153387..21171962)
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AA seq
1195 aa
AA seq
DB search
MDHHEDDGRPGGESQPKRDDEESVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTTVIKKLKQINEEQREGLMDDLRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED
SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTAQDHEEFFKSLNIT
ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKILNAKGELNDENVSSYEKLRKS
YDHLYRNVSSFAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEAEQGQQTSLEAIEVSTDCLLQ
DGKINEKGEKGKDREEKDKEKNNDTDKEKGKEKDGDRKMENEKEKLKNIEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSVILLQMLEEEFSFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNMTRYSSIEEINAAFVELEEHE
RSVSNDKPNTEKHLDAEKPSRATSNITSANGRDTVNGSKENGGAHEDGADSDSDTGSGTI
EAEGRDDEESDLENNHEDGCDTEDDEDDEEPGGPASDEDDEVHVRQKVPEVDPREEANFE
QELRAVMQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGG
SKEVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEE
ELNGLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGSRHPHHRYPGSGVHYSRKK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcatgaagatgatggtcgcccaggaggtgaaagtcaacccaagagagatgat
gaggaaagtgttgctcgccaggaagaaattaaaaagtcatttgaggctaaaatggctcta
cgacaaagtaatctgaatcctgagagacctgactctggattccttagaactttggattct
agtattaaacgcaacacaacagttattaaaaaattaaagcagataaatgaagaacaacga
gaagggctgatggatgatttgcgaaatgtaaatatgagtaagtttgttagcgaggccgtt
tctgccatctgtgatgccaagcttagaacttctgatattcaggctgccgttcagatctgt
tcgctccttcaccaaaggtacaaagacttctcaccatgcctaattcaaggactcttgaaa
gttttctttcctggaaagtctggggatgagttggatgctgatagaaatttgaaggccatg
aagaagcgcagcactctcaaacttcttatggaacttttttttgttggagttgtagaagac
agtgccattttcaataatattatcaaggatcttacaagtattgaacatttgagggatcga
gatactaccctaactaatttgactctccttgctagctttgctcggcaaggaagaatcctt
ttgggtctaccgcctactgcacaagatcacgaggagttttttaagagcctcaatattact
gccgaccaaaagaaattcttcagaaaggcttttcatacatattatgacgctgcagcagaa
ttgcttcagtctgaacatacttcacttcgccaaatggagcaggaaaatgcaaagatcttg
aatgcaaagggagagcttaatgatgaaaatgtctcttcttatgagaagttgcgaaaatct
tatgaccatttatacagaaacgtctcatcctttgcagaagcacttgatatgcaaccccca
gtgatgccagaggatggccacacgaccagggtttctgcaggagaagatgtttcatcgcct
gctgctgggaaagattcttctgtaattgaagccatatgggatgatgaagacacccgtgct
ttctatgaatgcttaccagatctcagggcatttgttccagcggtactgttgggagaagca
gaacctaaagcaaatgagcaatctgcaaagccggcagaaaatctggctgaatctgaagca
gaacaaggtcagcaaacttccctggaggccattgaggtttctacagattgtttactacag
gatggcaaaattaatgagaaaggtgagaaagggaaggacagagaagaaaaagataaagaa
aagaataacgatacagataaggagaaggggaaagaaaaagatggagatagaaagatggaa
aatgaaaaagaaaaacttaaaaatattgaaggaacaaatttggatgctttgttgcagaga
ctccctggttgtgtcagccgtgaccttattgatcagctgactgtagagttttgttatttg
aattccaaggctaaccggaagaagcttgtgagggctttgtttaatgtgcctaggacatca
ttggagttgctgccttactactcccgcatggttgcgacattgtcaacttgtatgaaggat
gtatctgtcattcttctccagatgttggaggaggagttcagctttttattgaacaaaaag
gaccaaatgaacattgaaacaaagattagaaatattaggtttattggagagctttgcaag
ttcaaaattgcttctgccggcctcgtttttagctgtttaaaggcatgtttagatgatttc
actcaccataatattgatgttgcttgtaatcttcttgagacctgtgggcgttttctttat
cggtctcctgaaactacagtacggatggctaacatgttggagatattgatgcgcttgaaa
aatgtaaaaaatttggatccccgacacagcaccctggtagaaaatgcgtactatctttgc
aagcctccagagagatctgcacgggtgtcaaaagttcgtccaccattgcatcagtatatt
agaaagttactcttctcagatctagacaagtctgccattgagaatgtgttgaggcaactt
cggaaacttccatggagtgaatgtgagcaataccttttaaaatgttttatgaaagttcac
aaagggaagtatggccagattcacttgattgcttctctaacgtctggtttgagtcgatat
catgatgaattctcagttgctgttgtcgatgaggtattggaagaaattaggcttggactt
gaagtgaatgattatgggatgcagcaaaaacgcattgctcatatgcggtttttgggggag
ctgtacaactatgaacttgtagattcatctgtggtctttgataccctttatttgattctt
gtctttggccatggcacttcagagcaagatgtattggatccacctgaggacactttccgc
ataaggatgattatcacgcttcttcaaacctgtggtcactactttgatcgtggatcttca
aagaggaaacttgatcgattttttatacacttccagaaatatattctcagcaaaggagct
cttccgttggacattgagtttgacttacaggatttatttgcggaactgcagccgaacatg
accagatactcatccattgaagagataaatgctgcttttgtagaacttgaggagcatgaa
cgttcggtctcaaatgacaagcccaatactgagaaacaccttgatgcggaaaagcccagt
agagcaacttccaatatcacctcagctaatggaagggacacagtgaatggctctaaggaa
aatggtggagctcatgaagatggtgctgatagcgacagtgatacaggaagtggcactatt
gaggcagagggacgtgatgatgaagagtcggacttggagaataatcacgaggatggatgt
gacactgaggatgacgaagacgatgaagaaccgggtgggcctgcttccgatgaggatgat
gaggttcacgttagacaaaaagtgcctgaggtggacccaagagaagaagccaatttcgag
caagagctcagggctgtaatgcaggagagtatggatcagcgcaggcaagagcttcgtggc
cgaccaacattgaatatgatgataccaatgaatttgtttgaggggtcgacgagggaccac
catggaaggggggctggtggagagagtggagatgagggattggatgaggatgctggtgga
agcaaggaggttcaagtgaaagttcttgttaagcgtggaaacaagcagcaaaccaagaag
atgtatatcccccgtgattgcacacttttacagagcactaaacagaaagaagcagcagag
ctagaagagaagcaagatattaagaggttaatcttagagtacaacgaccgggaagaggag
gaacttaatggactaggctcccaaacaatgaattggatgcagacagggggcaatagagtt
cctactcggggaaacaattgggaaggttcgggtgggaggagcggtggttcgcgtcatccc
catcatcggtatcctggtagtggcgtgcattatagtagaaagaagtga
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