Cucumis sativus (cucumber): 101214854
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Entry
101214854 CDS
T02486
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X2
KO
K12816
pre-mRNA-processing factor 17
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101214854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101214854
Spliceosome [BR:
csv03041
]
Complex C
Other components
Step II factors
101214854
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
101214854
NCBI-ProteinID:
XP_004135243
LinkDB
All DBs
Position
5:25757249..25760656
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AA seq
580 aa
AA seq
DB search
MDLLQSYTDQNDDDGSPKQLTSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKP
IDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYN
TFHKYGYAADPSASAGNNYIGDMEALEKNDAISVYNIPQHEQKKRKIEKKKEMSENEDME
EEVNPAEVDNPASDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKG
EVTSDKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFP
KHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKY
WDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHL
GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAA
QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK
TCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccagtcatacacagatcaaaacgacgatgacggaagccctaaacagctt
acatcttcaccagaagcgtctccgcctcgccttcttccctccaaaacctcggcgcctaag
gttgatgatacaatgttagccctcacggtggctaatgccaaccaaaccctttcgaagccg
atagacccaactcagcatcttgttgcgttcaaccccacttacgatcaactatgggcgccc
atttatggcccatctcatccctatgccaaggatggaattgcacagggaatgcggaaccac
aagctagggtttgtggagaatgcgtccattgagccatttgttttcgatgagcagtacaat
acgttccataaatacggatatgctgctgacccatcagcttctgctggaaacaattacatt
ggggatatggaggctttggagaagaatgatgccatttccgtgtataacattccacagcat
gagcaaaagaagcgaaagattgagaaaaagaaagaaatgagtgagaatgaagatatggaa
gaggaggtgaacccggctgaagttgataatccagcttctgatgtttggttgatgaagaat
aggaagagtccatggtctggaaagaaggaaggtctgcaaaccgagctaactgaagagcag
aagaaatatgcagaagagtatgcaaagaagaaaggtgaagagaaaggtggtgagaaggga
gaagttacatcagataagagtacttttcatggtaaagaggagagggactaccagggtaga
tcttggattgcaccaccaaaggatgccaaggccacgaatgatcattgttatataccaaaa
agattggtgcatacatggagtgggcacacaaagggtgtatctgctattagattcttccct
aaacatggccatttaattctttcagctggtatggacaccaaagtgaagatatgggatgtg
ttcaattctggtaaatgtatgagaacctacatgggtcactctcaagcggttcgggacatt
tcattttgtaatgatggatctaagtttctgaccgccggatatgataaaaagatcaagtat
tgggatacagaaacagggcaagtgatatcaaccttctctaccgggaaaattccttatgta
gttaagcttaatcctgatgatgataagcagaatatcttgctggcagggatgagtgataag
aaaatcgttcaatgggatatgaacacaggacagattacacaggagtatgatcaacattta
ggagcagtgaataccattacatttgtagacaataataggaggtttgttacatcgagcgat
gacaagtctctccgtgtttgggaatttggaattcctgttgttattaagtatatcagtgag
cctcacatgcattccatgccctctatttctgtacatcccaatacgaattggcttgcagca
cagagtttagacaatcaaattcttatttatagcactagggagagatttcagctaaacaag
aagaagaggtttgctgggcacattgtggcaggatatgcttgtcaggttaatttttctcca
gatggacgttttgtcatgtctggtgatggtgagggtaaatgctggttttgggactggaaa
acctgcaaggtattcagaactctaaagtgtcacgagggtgtatgcattgggtgtgagtgg
catccattggagcaaagtaaagtagcaacatgcggatgggatggactgataaagtattgg
taa
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