Cucumis sativus (cucumber): 101215136
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Entry
101215136 CDS
T02486
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101215136
Spliceosome [BR:
csv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101215136
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
ODAD1_CC
Motif
Other DBs
NCBI-GeneID:
101215136
NCBI-ProteinID:
XP_031740253
LinkDB
All DBs
Position
1:19784414..19823347
Genome browser
AA seq
961 aa
AA seq
DB search
METRLVLPTRRRELVFSLVSSIWSLLRSVRFYSKSMTIAMANDFQLLNNSGTKAKPIESD
SAVGLDESKLYEVVPKCGLDFEEWTSLISEIERKYPDVIEKISLVYDSFLSEFPLCHGYW
RKYASHKTRLCSVDRVVDVFEQAVQSATYSVGIWVDYCSFSISAFEDPSDIRRLFKRAIS
FVGKDYLSYSLWDKYIEFEVSQQQWDSLALIYIQTLRFPTKKLSYYHNSFRKLTASLKEN
IQSDTGCNNSMPMEFEASPDSEVPTKCTDTELSSVIKDLLDLSAGTTRYSSLLKYVHAGE
KLYDEACQLKEKIMHFEDKIRRTYFHVKPLDDGQLKNWHSYLDLVEMYGDFDWAVKLYER
CLIPCASYPEFWMRYVEFVETKGGRELAMFALERATKTFLKKVPVIHLFNSRFKEQIRDL
SGARAAFLQLDGDLDSKFVENIILKANMEKRMGKSTEAFNIYRDALQMALMKKKLDVLPA
LYVHFSRLKHMITGSVDAAMEVLIDGIRNVPLCKLLLEELINFVMVHGVPKLINLVDPIV
ANAISLKADVSQGWSEQDREDISTLYLKQAVDLCGTIHDVMKVWNRHIKLFPQSIRAMPY
KDPIPGIEAIKKTMGGKQTADSTVTNQPIRDDNVNPSNQPPLEENKESLLDNQNFKNDQS
SNGNEPTSCLLVKHNIAMKESTIDKINLGDSEICAEEREQVNSPKVLERYGSGGNQIESA
QMPMPMDNSKKDEYGDALGVTLKNLSIKSLSLNAKNNDKINLPSKACHEGEPPLENSLSS
ESVSNTDEEVVMHNPLNVGSSSSIQISNEGASPSSFPSPGKPTHPQVHTQFHMHETGDRK
WHHKRHAGNLHHDLQHDFQGHSRRRPHRTWKDSPQDYRGMQSGQTSGDQDYTSETIASQK
PQVERISQDHNHIQSAQQQQNFPTTSQSQLPSQGFTQEKSQNTTPNYEQYGHMQSSQVPN
T
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggagacccgtctagttcttccgactcgacgtcgggaacttgtgttttcgctggtttct
tccatctggtcattgctacgttcagtccggttctattccaaatcaatgactattgctatg
gcgaatgattttcaacttctcaataattcaggcacaaaagctaaaccaattgaatcagac
tccgcagttggcttagatgagtccaaactttacgaagttgttcccaaatgtggactagat
tttgaggaatggacttcacttatttcagagattgagagaaagtatcctgatgtcattgag
aagatctctttggtgtatgactcattcttgtccgagtttcctctgtgccatggatactgg
agaaagtatgcatctcacaaaacaaggttgtgctctgtggacagggttgttgatgtattt
gaacaagcagtgcaatcagcaacttattctgttggtatttgggttgattactgtagtttc
agcatatcagcttttgaagatccatctgatattcgaagattgtttaagagggcaatctcc
tttgtcggaaaagactatttgagctatagcttgtgggacaagtacattgagtttgaggta
tctcaacagcagtgggactccttagctctgatttacattcaaactctgagatttcctacc
aaaaagttgtcttattatcacaacagcttcagaaaattgactgcttctctgaaagagaat
atccaatctgatactgggtgcaataattcaatgcccatggaatttgaagcttctccggat
agtgaagtcccaactaagtgtacggatactgaactgtcttctgtcattaaagaccttctg
gatctgtctgctggcacaactaggtatagttcactactgaagtacgtgcatgctggtgaa
aaactctatgacgaagcatgtcaactaaaggaaaaaattatgcactttgaggataagatc
aggaggacatattttcatgtaaaaccccttgatgatggtcaactgaagaattggcattct
tatttggacttagtggagatgtatggagattttgattgggcggttaaactctacgagaga
tgcttaattccctgtgctagttatcctgagttttggatgcgctatgtggagtttgtggaa
actaagggtggaagagagttagcaatgtttgctctagagcgtgcaacaaaaacttttctc
aagaaagttcctgttatacatcttttcaattcaaggtttaaggaacaaataagagattta
tcgggtgcacgtgctgcttttcttcagcttgatggagatttagattctaagtttgtggaa
aatatcatattgaaggctaatatggagaaacgaatgggaaaatctacagaagcttttaat
atttaccgagatgccctgcaaatggctttgatgaagaagaaattggatgttttaccagct
ctgtatgtacatttttctcgacttaaacacatgattacaggaagtgttgatgctgctatg
gaggtcttaatagatgggatccgaaatgtacctctctgcaaattacttcttgaggaactt
ataaacttcgtcatggtgcatggagtgccaaagcttataaatttagttgatcccatcgta
gctaatgcaatatctctcaaggcagacgtatctcaaggttggagtgagcaagacagagag
gatatttcaactctgtatttaaagcaggctgttgacttgtgtggaaccatccatgatgta
atgaaggtgtggaatcgacatattaaattgtttccacagtctattagagcaatgccatat
aaagaccccataccagggatagaagccataaaaaagaccatgggaggaaaacaaacagca
gattccactgtaaccaaccaaccaatcagagatgacaatgtcaatccatcaaatcagcct
cctttagaagaaaataaagagtctctgttagataaccaaaacttcaagaatgaccaatct
tccaatgggaatgaaccaacatcctgtttactcgttaagcataatattgctatgaaagag
tctaccatcgacaagattaatttaggagattctgaaatttgtgcagaggaaagggagcag
gtaaattctccaaaagttcttgagcgttatggaagtggtggaaatcagattgaatcggca
caaatgccaatgcccatggacaactccaaaaaagacgagtacggtgatgctttgggcgtg
accttgaaaaatctttcaattaagagtctttccttgaacgcaaagaacaatgacaaaata
aatttaccttccaaagcatgtcatgaaggggaacctcccttggagaacagtttgtctagt
gaaagtgtcagcaatacagatgaagaggttgtaatgcacaaccctctaaatgtcggatct
tccagttccatccagatttccaatgaaggggccagcccatcatcctttccaagtcctggc
aagcctacacacccccaagtacatacacagtttcacatgcatgaaactggggacagaaag
tggcaccataaacgtcatgctggtaacttgcatcatgacctccagcatgattttcaagga
cactcacgaagaaggcctcatcgaacatggaaagattctcctcaggactaccgaggaatg
caatctggtcaaacatcaggtgatcaagattatacctctgaaactattgcttcacaaaaa
ccacaagttgaacgaatcagccaagaccacaatcatattcaatctgcgcagcagcagcag
aacttccccactacttctcagtctcaacttccttctcaaggttttactcaagagaaatct
caaaatactacaccaaactacgagcaatatggtcacatgcagagtagtcaggtgccaaat
acctaa
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