Cucumis sativus (cucumber): 101215293
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Entry
101215293 CDS
T02486
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03022
Basal transcription factors
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101215293
09124 Replication and repair
03420 Nucleotide excision repair
101215293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101215293
03400 DNA repair and recombination proteins [BR:
csv03400
]
101215293
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101215293
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101215293
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101215293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
101215293
NCBI-ProteinID:
XP_011654733
LinkDB
All DBs
Position
5:complement(1601044..1608901)
Genome browser
AA seq
768 aa
AA seq
DB search
MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD
HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK
GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgacaaaggaagacccaacaaaaaacctaaattcggcaaggaggattac
aagaaagctaattttgaagatgatgatgtctaccatcttgatgatcccgacgacgacgat
cgctatggtgataaagaaggaggcaagagagactttagcaaattggagttaaaacctgac
catgctaaccggcctttatgggcttgtgctgatggtcgtatattccttgaaactttttcg
cccttgtacaaacaggcgtatgatttccttattgccattgcggaaccagtttgcaggcca
gaatcaatgcacgagtataacctcactccacattctttgtatgctgcggtttctgttggt
ctggagacggaaacaattatagcggttctgagtaagttgtcgaaggccaaactccctaag
gagatgattgatttcatttatgcttctactaccaactatggcaaggtgaagcttgtcctt
aaaaagaaccgatatcttgtggaatccccatttccagaggtgttgcagaaattgctcaag
gatgaggttataggcagagccagagtcgttcatgaggattctggaaatggtgagtttaca
gttagcaaaacagcgggtgaacttgggagtcgccatgaaggattgcttaatgaagcagaa
gctgcagctgcagccgaggaaagagaaactcattcatttgaaattgacccgtcacaagtt
gaaaatgttaaacaacgctgcctgcccaatgccttaaattatcctatgctggaagagtat
gacttcagaaatgatactatcaatccagacttggatatggaactgaaaccacaggctcaa
cctaggccgtatcaggaaaagagtcttagtaaaatgtttggaaatggtagagcaagatct
ggcattattgtacttccttgtggagctgggaagtctctggttggagtttctgcagccagt
cgtatccgaaaaagttgtttatgtttagctacaaatgctgtatcagtggatcagtgggct
tttcagtttaagttgtggtctaccattcgagatgatcaaatttgtcggttcacatcagat
agtaaagaaagattccgaggaaatgccggggtggttgttacaacttataacatggttgct
tttggtggtaaaagatctgaagaatctgaaaagattattgaagaaatcagaaacagagag
tggggactacttctcatggacgaggtgcacgtggttcctgctcacatgtttcgtaaggtt
atcagcctgactaagtctcactgcaagcttgggctcactgccacacttgtgagagaagac
gaaagaattacagatttaaactttcttattggtcccaagttgtatgaagcaaactggttg
gatcttgtgaaaggaggatttattgcaaatgtgcagtgtgctgaagtttggtgtcctatg
acaaaggagttttttgctgaatatctgaagaaagaaaactcaaagaaaaaacaggctctt
tatgtaatgaatcccaataagttcagggcgtgtgagttcctcatacggtttcatgaacag
cagcgtggtgataagataattgtttttgctgacaatctttttgcacttacggaatatgca
atgaagcttcgtaaacctatgatctatggtgcaacaagtcatattgagaggacaaaaatt
cttgaagcattcaaaactagtcgtgatgtgaataccgtttttctttcaaaggtgggtgat
aactctatcgatattcccgaggcaaatgtgatcattcagatttcatcacatgcgggttca
aggcgtcaagaagcccagcgtctggggcgtattctcagggccaagggtaaacatcaggac
aggatggctgggggtaaagaggagtataatgccttcttctattctcttgtttctacggat
acacaggaaatgtactattcaactaaacgacaacagtttttgatcgatcaaggttatagc
tttaaggtaattacaagcttgccacccgctgatgcaggagctgagttgagctatcatcgt
cttgatgatcagttggcacttcttgggaaggtactgaatgcaggcgacgatatggtagga
ttggagcagttggaagatgatgcagaccaaattgccctcgatgcagctcgccgttcaaag
ggatccatgagtgcaatgtcaggagcaaatggcatggtctacatggagtacagcactgga
cggaagctcgctggtcaagggcagcttaagagcaagcccaaagacccagcaaagagacat
catctgttcaaaaagcgatttgcgtga
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integrated database retrieval system
