Cucumis sativus (cucumber): 101215351
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Entry
101215351 CDS
T02486
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv04120
Ubiquitin mediated proteolysis
csv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101215351
04120 Ubiquitin mediated proteolysis
101215351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csv04121
]
101215351
Enzymes [BR:
csv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101215351
Ubiquitin system [BR:
csv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101215351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
FlxA
zf-RING_5
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
101215351
NCBI-ProteinID:
XP_004139202
UniProt:
A0A0A0LJG4
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All DBs
Position
2:2486436..2494283
Genome browser
AA seq
558 aa
AA seq
DB search
MMKLQTYAGISFIATIMVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQL
TKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLA
QKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIDSLIQTRKASVSLFFSFEYM
ILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYG
VPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMT
VAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTTTGHHGVQSDANQQGTGTT
SSSAQGTSGTGVTNDNLSHHQARVRAAAAAASIYEKSYVYPCASTLVWSLGYAVVPQVER
PLFDSNNTETNGEQSPNGHPQYFSFPGGPSNLSFTQFPQNIFVPFQPREGTGNNIEELGS
SLNVSGSQLEAQEKFLQQQIEFLQNQLQLLRKPKVEESSRGASEADKKGKSLAISPSSSA
SLSSSDSHPPGETERAVR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacatatgcggggattagttttattgcaaccataatggttatctat
catgccttcaacagtagagggcagttctacccagcattggtctatttatcgacctccaag
ataaatctagtacttcttctcaatatgggtttagtcatcatgtgcattttgtggcagcta
acaaaaaagatatttctgggttctcttagagaagcagaagttgagaggctcaacgagcaa
tcatggaaggagttgatggaaatcctctttgccatcactatttttcggcaagatttttct
gttgcattcctgggtatggttacggctctgttgttgatcaaagctctccattggctggct
cagaagagagttgaatacatggaaaccactccatcggtgccattgttgtctcatatccgg
attgtttctttcttaggcttcctctttgttctcgatagtctgtttttttataattcgata
gattctctgatacagacaagaaaggcctcggtttccctcttcttttcatttgagtatatg
attcttgcgacaacagctgtgtcaacatttgtgaaatatatcttctatgtcagtgatgtg
ctcatggagggacaatgggaaaggaaaccagtctatacattttacttggaacttattcga
gacttgcttcacttgtcgatgtacttgtgtttctttcttgtgattttcatgacttatggt
gtgcctttgcacttgatccgagagctttatgagatctttaggaatttcaggattcgcatt
gcagattacatccgttatagaaagattacttcaaacatgaacgatcgttttccagatgca
acgcctgaagaactcaattcaagtgatgcaacatgcattatttgtcgtgaagagatgaca
gttgcaaagaaactagtatgtggacacctttttcatgtccattgtctccgatcttggttg
gagcgacaacatacttgtcccacttgtagagcccttgttgtaccacccgaaggttcaagt
acaacaaccggtcatcatggagtgcagtctgatgctaaccaacaaggaacaggaaccaca
agttcatctgcacaaggtacaagtggcacgggcgttactaatgataatttaagtcatcat
caagctagagtccgagctgctgccgccgctgcttcaatatatgagaaatcgtatgtttat
ccttgtgcgagcacattagtatggtctcttggatatgcagtagttcctcaagttgaaaga
cctttgtttgactctaacaatacagaaacaaacggagagcaatctcccaatggacatcca
caatacttttcatttcctggcggcccttcaaacctgtccttcactcaatttccccaaaat
atctttgttccttttcagccacgagagggcactggaaacaatatagaggaattgggcagt
agtttaaatgtatcaggctcacagcttgaagctcaagaaaaatttcttcaacaacagatt
gagttccttcagaatcaactgcaacttctccgtaaaccaaaagttgaggaaagctcaaga
ggagctagcgaggcagataaaaaagggaaaagtttagctatctcaccatcatcgtcggcg
tcattgtcttcatcagattctcatccacctggagaaaccgaaagggcggtaagatag
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