Cucumis sativus (cucumber): 101215589
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Entry
101215589 CDS
T02486
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101215589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csv03400
]
101215589
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101215589
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
PAXNEB
Motif
Other DBs
NCBI-GeneID:
101215589
NCBI-ProteinID:
XP_011648756
UniProt:
A0A0A0LS02
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Position
1:2257804..2265192
Genome browser
AA seq
942 aa
AA seq
DB search
MGDNVDEQTKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHSDNAVFIAKT
YYRTTTALRQLGNASEALSSVSVSKNMFESIARDLLLERTDHTLELYEGSGSNWRLIKSG
SPGNIGSFEDVLFANNEMQDSPAIVALFPYFRDNGCIVGLGYVDLTKRVMGMAEFIDDSH
FTNVESALVGIGCKECLLPLESGKSGDIKPLHDVLTKCGVMLTERKKSEFKMRDLVQDLS
RLIKGSVEPVRDLVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAA
IRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEISSRLDLVQAF
VEDTALCQDLRQHLKRISDIERLTHYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQ
FSSLIKEKYLEFLETCTDNDHLNKFNNLVETAVDLDQLENGEYMIASSYDDTLSKLKNVQ
ESIEQQIQDLHRQVANDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLE
TRKDGVKFTNTKLKKLGDQYQKIVEEYKSCQKDLVHRVIETASSFNEVFRPLAELLSELD
VLLGFADLASSCPTPYTRPDITSSNEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHGNTDLDSHGKQMAGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVA
EFANFPSSVVALAREKAAELEDFSIDTTASTTNGKEIPLKRKREFSSDDMSKGVERARQF
LEEFSNLPLDKMDLKEALQQVSQLRDGLKKDAVDSNWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacaacgttgatgagcaaaccaagcttcccgagctcaaacttgatgctaagcag
gctcaagggtttctcgcattcttcaaaaccctaccccctgactccagagctgttcgattt
tttgatcgtcgggattactataccgcccatagcgataatgcagttttcattgcaaagacc
tattaccgtactacgactgctttacggcaactgggcaatgcatctgaagccctgtctagt
gtgagtgtcagcaaaaatatgtttgaatccattgctcgagatcttcttttggaaagaacg
gaccatacactagagctttacgagggtagtggttcgaattggagattgatcaaaagtgga
tcacctggcaatattggcagttttgaagatgttttgtttgcaaataatgaaatgcaggat
agtcctgctatcgtggcactgtttccatacttccgagataatgggtgcattgttggacta
ggctatgttgatttaacgaaaagagtgatgggaatggctgaatttatcgacgatagtcat
tttacaaatgtggagtcagctctggttggtattggttgtaaggaatgccttctgcctcta
gaaagtggaaaatctggtgatataaaacctttacatgatgtattgacgaagtgcggtgtg
atgctaactgagaggaagaagtcagaatttaaaatgagagacttggtgcaggatctttcg
aggctcatcaaaggttctgttgaacctgttcgagatttggtatctggttttgaatttgca
cctgctgccttaggagcactgctggcgtatgcagaattactagcagacgaaagcaattat
ggaaactataacatccagaagtacaatcttgatagctacatgaggctagactctgctgcc
attagagcattaaacgtcctagagagcaaaaccgatgcaaacaaaaacttcagtttgttt
ggtcttatgaatagaacctgtactgctggaatgggtaaaagattgctgcatatgtggtta
aaacagcctctgttagatgtcaaagaaattagttccagactggatcttgttcaggcattt
gtggaggacactgctctctgccaagatttgagacagcatctcaaacgaatctcagatatt
gaacgattgacgcattatcttgagaagagaagagctggattacagcatattgttaaactt
tatcagtcaagtataaggcttccattcattaaaaatgccttggagaactacgaaggacaa
ttttcctcattgatcaaggaaaagtacttggaatttctagagacctgtactgacaacgat
cacctgaacaagttcaataatctcgtggaaactgctgttgatcttgatcagcttgagaat
ggagaatatatgattgcatccagttatgatgatactctttccaaattgaagaatgtgcaa
gaatcaatagagcagcaaatacaggacttgcataggcaagttgctaatgatcttgatctt
ccagttgacaaggctttgaagttagacaaaggtacccaatttggacacgtttttagaatt
actaagaaagaagaaccaaaagtaagaaaaaagctctccacccacttcattgttcttgaa
acccgaaaagatggagtgaagtttacaaataccaaacttaaaaagttaggtgaccagtat
cagaaaatcgtcgaggagtacaaaagttgccagaaagatttggttcatcgagtaattgaa
actgcttcatccttcaatgaggtattcagacctttggcagagttgctctctgaattggat
gttttacttggttttgctgatttagcttctagctgtcccactccttatactagacctgac
atcacttcatcgaatgagggaaatattatattggaaggaagtaggcatccttgtgtggag
gctcaagactgggttaatttcataccaaatgattgtaaactagtaaggggtaaaagttgg
ttccagatcattactgggcctaacatgggtggaaaatctacatttatccggcaggtagga
gtgaacattctaatggcacaagtaggttgctttgttccctgtgacaaagctagcatttct
gttcgtgactgcatttttgctcgcgtaggtgcaggtgactgtcagcttcgtggagtttct
acctttatgcaagagatgcttgaaactgcatctatactgaagggagctacagagaaatct
ttgataatcattgatgaattgggccgtgggacatccacttatgatggatttggtctagca
tgggccatttgtgaacatcttgttgaagtgattaaagcacccactttgtttgcaacccac
ttccatgaacttactgcactagctcatgggaatactgatcttgattcccatggaaagcaa
atggctggtgtggcaaattttcatgtcagtgcacacatagactcatcaaatcacaagttg
acaatgctatacaaggttgaacctggagcatgtgatcaaagctttgggattcatgtagca
gaatttgcaaactttccttctagtgtcgtggcacttgccagagaaaaggctgctgaactg
gaagatttctccattgatacaactgcttcaaccactaatgggaaagagataccattaaag
agaaaacgtgagttcagttcagatgacatgtccaaaggcgtagaacgggctcgccagttc
ctagaggagttttctaatctgcccttggataagatggatctgaaggaagctctacaacaa
gtgagtcaattgcgagatggtttgaagaaggatgccgtggactctaattggctccaacaa
ttcctttga
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